PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr9P28060_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bHLH

Protein Properties

Length: 306aa MW: 34244.6 Da PI: 8.1437

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr9P28060_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.2	1.9e-10	138	186	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L+ l+P + sk Ka +L + ++Y++sLq GSMUA_Achr9P28060_001 138 SNHSLAERVRREKINERMKLLQGLVPGC----SKVTGKAVMLDEIINYVQSLQ 186 58***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.11E-18	133	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.60E-10	134	190	No hit	No description
PROSITE profile	PS50888	15.923	135	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-17	137	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-7	138	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-11	141	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MMNPFDATTS RDNSGAQMQK KNKIDMMEAV RISSLSTDYV SKNGSLMKEQ KDMHHQPNRT 60 GVHQEDPSNL ATAAGNSSSS TTRRRANEIP MEMEEDHEPK SERKSLTVAT VNPKRKQVKD 120 ITESDLVHVR ARHGQATSNH SLAERVRREK INERMKLLQG LVPGCSKVTG KAVMLDEIIN 180 YVQSLQQQVE FLSMKLAAIN PRLDIDREGV LPKYLLQPCN SPSAAAGFSS DIIHPQLHLP 240 HQGLIQSALS GPRNPPDLLG RSIDTQMTAE DGYNMQVSNA WDEELHNVVQ MRCSSSTNLY 300 THRIQQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009419224.1	0.0	PREDICTED: transcription factor bHLH49-like isoform X1
Refseq	XP_009419226.1	0.0	PREDICTED: transcription factor bHLH49-like isoform X1
Refseq	XP_018686940.1	0.0	PREDICTED: transcription factor bHLH49-like isoform X1
Swissprot	Q9CAA9	1e-50	BH049_ARATH; Transcription factor bHLH49
TrEMBL	M0U463	0.0	M0U463_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P28060_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2909	37	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	9e-53	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]