PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P28370_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 214aa    MW: 24874.2 Da    PI: 7.4065
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P28370_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-16552148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+W+++Ed++lv+ v ++G ++W+ Ia+  g++Rt+k+c++rw +yl
  GSMUA_Achr9P28370_001  5 KGPWSEQEDLQLVRIVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 52
                           79********************************************97 PP
2Myb_DNA-binding55.71.1e-1758102147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            rgr T++E+ l+++++ +lG++ W++Iar+++ gRt++++k++w+++
  GSMUA_Achr9P28370_001  58 RGRITPQEERLILELHSRLGNR-WSRIARKLP-GRTDNEIKNYWRTH 102
                            89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.944152IPR017930Myb domain
SuperFamilySSF466895.59E-30399IPR009057Homeodomain-like
SMARTSM007176.9E-15454IPR001005SANT/Myb domain
PfamPF002491.5E-15552IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-21659IPR009057Homeodomain-like
CDDcd001678.93E-11752No hitNo description
PROSITE profilePS5129425.74753107IPR017930Myb domain
SMARTSM007174.4E-1657105IPR001005SANT/Myb domain
PfamPF002491.3E-1558102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-2560106IPR009057Homeodomain-like
CDDcd001671.05E-1162102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MAMRKGPWSE QEDLQLVRIV GLFGDRRWDF IAKVSGLNRT GKSCRLRWVN YLHPDLKRGR  60
ITPQEERLIL ELHSRLGNRW SRIARKLPGR TDNEIKNYWR THTRKKAQER KRKPCPSSSL  120
TYISAAQIEL PPEVVAESSS TSALGEISDD AVEDYSMDQI WNEIAMPDMI SGLSFGECKD  180
EVYDGMCSAI PSPLWEYCSY PLWKMDDEDF RAYH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-3051074105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009419269.11e-159PREDICTED: myb-related protein MYBAS2 isoform X1
SwissprotQ4JL761e-75MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBLM0U4941e-158M0U494_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P28370_0011e-159(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.33e-72myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]