PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P28840_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 295aa    MW: 32520.4 Da    PI: 5.1522
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P28840_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.5e-20119168255
                    AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            +++GVr+++ +g+++AeIrd +     r  r++lg+f+taeeAak ++ a+ kl+g
  GSMUA_Achr9P28840_001 119 RFRGVRRRP-WGKYAAEIRDpW-----RrVRVWLGTFDTAEEAAKVYDSAAIKLRG 168
                            79*******.**********88.....55*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.60E-29118175No hitNo description
SMARTSM003807.3E-33119182IPR001471AP2/ERF domain
PROSITE profilePS5103223.077119176IPR001471AP2/ERF domain
PfamPF008476.9E-12119168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-28119176IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-20119176IPR016177DNA-binding domain
PRINTSPR003673.4E-10120131IPR001471AP2/ERF domain
PRINTSPR003673.4E-10142158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
METTLLLPVK RTEHVHVTPK PLAPRRPEHA HAHKPRTVRI YCEDLDATDS SGDDEEEPEC  60
RTLRRVRRYV QEIRFEVRPS PVCTSSKASK GAAATGRKRK AAAAADVADA DDGDRSVKRF  120
RGVRRRPWGK YAAEIRDPWR RVRVWLGTFD TAEEAAKVYD SAAIKLRGPG AATNFSQPAV  180
DISPAGPPPN KHLPDDNLAS AAEAPASASE RSRPDQLVDI LPFEEVPLFD EILGLSHSRP  240
SYFDDSAPIG FLAEEMSDAL FGAGLDLDLG LSTWQADDYF EDIGDLFPIE ALPAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-19111175271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009419316.10.0PREDICTED: ethylene-responsive transcription factor CRF1-like
TrEMBLM0U4E10.0M0U4E1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P28840_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.15e-27cytokinin response factor 4