PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr9P30700_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

G2-like

Protein Properties

Length: 109aa MW: 12457.7 Da PI: 11.4274

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr9P30700_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	93.9	1.3e-29	18	67	2	51
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 pr+rWt+eLH rFv+av+ LGG +kAtPk+il+lm+vkgLt++hvkSHLQ GSMUA_Achr9P30700_001 18 PRIRWTEELHGRFVDAVHVLGGRNKATPKQILQLMGVKGLTISHVKSHLQ 67 8************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.075	14	74	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-27	14	67	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.11E-15	16	68	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-23	18	68	IPR006447	Myb domain, plants
Pfam	PF00249	5.2E-9	21	67	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 109 aa Download sequence Send to blast
MTCLVRRGVR QYNRSETPRI RWTEELHGRF VDAVHVLGGR NKATPKQILQ LMGVKGLTIS 60 HVKSHLQVCM FPSFRLLQTS LLFYRGRVQE INLSLSLSLQ LSPSVCLLP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-16	19	75	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-16	19	75	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-16	19	75	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-16	19	75	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-16	19	75	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-16	19	75	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-16	19	75	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-16	19	75	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018673571.1	3e-44	PREDICTED: protein PHOSPHATE STARVATION RESPONSE 3-like isoform X2
Swissprot	Q700D9	3e-20	MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBL	M0U4X7	2e-73	M0U4X7_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P30700_001	3e-74	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5493	37	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	6e-23	G2-like family protein