PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_AchrUn_randomP00900_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

TCP

Protein Properties

Length: 227aa MW: 23883.5 Da PI: 6.6336

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_AchrUn_randomP00900_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123.5	2.3e-38	66	197	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaessss 80 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLlqqa+pai+++tgt++++as+ +a++ GSMUA_AchrUn_randomP00900_001 66 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGYKSDGETIRWLLQQAEPAIIAATGTGTIPASALaSAAAAGP 145 789*************************************************************9999966622111111 PP TCP 81 sasnsssg................................................k 89 ++ + + GSMUA_AchrUn_randomP00900_001 146 TG-----PmsfasllaghgqqlpglelglsqdahsgalnpqalnqfysqighvmgaA 197 11.....12222333444433444444444444444445555555555555555551 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.4E-31	71	195	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.938	72	126	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MDPKDSSKQP QYVSRLPQER SLPLSHETDA AAAAESSDLV PAAASERHGG LQVVAAEKDE 60 QRKQLAPKRS SNKDRHTKVE GRGRRIRMPA LCAARIFQLT RELGYKSDGE TIRWLLQQAE 120 PAIIAATGTG TIPASALASA AAAGPTGPMS FASLLAGHGQ QLPGLELGLS QDAHSGALNP 180 QALNQFYSQI GHVMGAAGSA GSAGSGQLQH QQQQQVFSAE DDSQESE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269\|PubMed:12631321, ECO:0000269\|PubMed:16123132}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009385477.1	1e-86	PREDICTED: transcription factor TCP20-like
Refseq	XP_009385479.1	1e-86	PREDICTED: transcription factor TCP20-like
Refseq	XP_018676704.1	1e-86	PREDICTED: transcription factor TCP20-like
Refseq	XP_018676705.1	1e-86	PREDICTED: transcription factor TCP20-like
Swissprot	Q9LSD5	5e-44	TCP20_ARATH; Transcription factor TCP20
TrEMBL	M0U5A2	1e-161	M0U5A2_MUSAM; Uncharacterized protein
STRING	GSMUA_AchrUn_randomP00900_001	1e-162	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2864	32	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	7e-43	TCP family protein

Publications ? help Back to Top
Zhu P, et al. Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972 [PMID:27708161] Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692]