PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP02240_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 274aa    MW: 30240.3 Da    PI: 8.4157
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP02240_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.2e-05104123221
                                    EETTTTEEESSHHHHHHHHH CS
                        zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                                    +C+ Cgk+Fs++  L  H+r
  GSMUA_AchrUn_randomP02240_001 104 PCTECGKRFSSWKALFGHMR 123
                                    5******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.034103130IPR007087Zinc finger, C2H2
SMARTSM003550.0044103125IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.77E-9104125No hitNo description
Gene3DG3DSA:3.30.160.606.4E-5105125IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.1E-8105127IPR007087Zinc finger, C2H2
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
SuperFamilySSF576673.77E-9202229No hitNo description
PROSITE profilePS501578.871207234IPR007087Zinc finger, C2H2
PROSITE patternPS000280207229IPR007087Zinc finger, C2H2
SMARTSM0035511207229IPR015880Zinc finger, C2H2-like
PfamPF139122.6E-9208231IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MDSSSSINLP YRPPPPPPPP YQPLHQLTPP TLQHLDENSA RPLPPKPKYK PSPGFVPHSR  60
DPTFQHHLGP FSFPPTSTMA KTKPRRKPDL AAATTAGPKA TTPPCTECGK RFSSWKALFG  120
HMRCHPERQW RGINPPPHLR RPLPLASPTP EEHFTDEEYE VAASLILLSR GPHRNISALC  180
RAEPERADAM QPFSFPQPQQ TSGGVLCKCD VCSRGFAAGQ ALGGHKRHHW EREEDIVVGC  240
SSSGNYDLDL NLPPPSLENN EANPSTVLDL RLGI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385663.11e-128PREDICTED: zinc finger protein ZAT3-like
TrEMBLM0U5N60.0M0U5N6_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP02240_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116122130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.16e-30C2H2-like zinc finger protein