PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP02900_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 517aa    MW: 55866.6 Da    PI: 7.7425
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP02900_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.3e-13370414554
                                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                            HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                    h e+Er+RR+++N++f  Lr+++P+       K++Ka+ L  Av YI++L
  GSMUA_AchrUn_randomP02900_001 370 HVEAERQRREKLNQRFYSLRSVVPNV-----SKMDKASLLADAVTYINEL 414
                                    899**********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.7E-40152303IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.552365414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.11E-16369431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-17370429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-10370414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.85E-13370419No hitNo description
SMARTSM003532.6E-15371420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MTNYVNCVFD KERIRPECRA GSAVVVPAAG PSFFPNASPS TIKPAAESNR PPAKRLVARA  60
RLRPSPPPLT HEALDRRQSL RHGGLHLLPR GRSGAPPPPL AAVCQLSRLL HRDLLGSGAL  120
QPGEPAAAPQ LADRGCQREL DVRHILAEFP HRGAAALTWG DGYYRGCEED KGKPLGGGAS  180
SLAEQEHRKH VLRELNALVS GGGGDDAADE DVTDTEWFFL VSMTQTFALG AGLPGQALLS  240
SSPAWIAGAD RMATALCERV RQARALGLRT MACVPLGSGV VELGSTHEIF RNSEILRKAR  300
ALFGDGVIDP SMLWFSVPSA PMPSSPERNE EVFLSSSAAV AEGVKCEGLF GGGESDNSDI  360
EASAKEPLDH VEAERQRREK LNQRFYSLRS VVPNVSKMDK ASLLADAVTY INELRSKTQA  420
LESNNRGLHG RCGGEVDVEV KIVGSEAIIR VQCDRRSHPP ASLMVALKEL DLELYYANIS  480
VVKELMIQQA TTKMTTRVYS QQQLTAKLLG RMIAVLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-4115730347192Transcription factor MYC3
4rqw_B4e-4115730347192Transcription factor MYC3
4rs9_A4e-4115730347192Transcription factor MYC3
4yz6_A4e-4115730347192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009408104.11e-158PREDICTED: transcription factor MYC2-like
TrEMBLM0U5V20.0M0U5V2_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP02900_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44523157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.12e-61NACL-inducible gene 1