PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_AchrUn_randomP02930_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

LSD

Protein Properties

Length: 150aa MW: 15582.2 Da PI: 7.7108

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_AchrUn_randomP02930_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	31.2	3.7e-10	27	51	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCr+lL YP GA+sV+Ca+C +V GSMUA_AchrUn_randomP02930_001 27 CCGCRNLLIYPGGATSVCCAVCSAV 51 99********************998 PP
2	zf-LSD1	39.4	9.9e-13	73	97	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+tlL+Y rGA++V+C++C+tV GSMUA_AchrUn_randomP02930_001 73 CGSCHTLLMYVRGASRVQCSCCHTV 97 ************************9 PP
3	zf-LSD1	37.2	4.9e-12	111	135	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+ lL+Y +GA+sV+Ca+C +V GSMUA_AchrUn_randomP02930_001 111 CGNCHMLLMYQYGARSVKCAVCSFV 135 **********************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.6E-10	24	54	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	3.3E-7	27	51	IPR005735	Zinc finger, LSD1-type
SuperFamily	SSF48695	4.72E-6	41	118	IPR011031	Multihaem cytochrome
Gene3D	G3DSA:3.90.10.10	9.7E-5	42	132	No hit	No description
TIGRFAMs	TIGR01053	2.2E-14	70	99	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.7E-10	73	97	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.1E-9	108	137	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.4E-11	111	135	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MPVPLAPYPT PPLPLALPNS GQSQVVCCGC RNLLIYPGGA TSVCCAVCSA VTTVPPPGFL 60 EFSAGTEMAQ LICGSCHTLL MYVRGASRVQ CSCCHTVNLA PEANQVAHVN CGNCHMLLMY 120 QYGARSVKCA VCSFVTSVGA SPSTEQKPGN

Functional Description ? help Back to Top
Source	Description
UniProt	Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269\|PubMed:15915636}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. Down-regulated by dark. {ECO:0000269\|PubMed:15915636}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009385724.1	1e-104	PREDICTED: protein LSD1-like isoform X1
Swissprot	Q0J7V9	4e-72	LSD1_ORYSJ; Protein LSD1
TrEMBL	M0U5V5	1e-103	M0U5V5_MUSAM; Uncharacterized protein
STRING	GSMUA_AchrUn_randomP02930_001	1e-103	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1347	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.1	1e-57	lsd one like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]