PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP03390_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ZF-HD
Protein Properties Length: 250aa    MW: 26527.5 Da    PI: 7.1856
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP03390_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer97.31.1e-3068122358
                    ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                                    +vrY+eClkNhA+++GghavDGC Ef+++ gee t +al+CaAC CHRnFHRre+e
  GSMUA_AchrUn_randomP03390_001  68 GVRYRECLKNHAVAIGGHAVDGCSEFLAA-GEEDTLDALRCAACSCHRNFHRREEE 122
                                    589*************************9.8888*******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.8E-2869121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.4E-2770120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.85671120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-1971119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.2E-19178248IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.5E-31179249IPR009057Homeodomain-like
TIGRFAMsTIGR015658.7E-25187244IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MDFEDHDEAD EEMGLLAISG YDNPMPNSAR GGAGGGGDKM GGSAGGAEEA AVSGSGKRKV  60
GGDGGGWGVR YRECLKNHAV AIGGHAVDGC SEFLAAGEED TLDALRCAAC SCHRNFHRRE  120
EEGGGGAAVL ETVGCYHRFS PFYRTPAGYL HHRHHMVVAA DSNPMMGAGG LVGVGGATGT  180
SGSGGHRKRS RTKFTQEQKE KMLAFAERVG WRIQKHDEAA VQQFCGETCV DRHVLKVWMH  240
NNKQTLGKKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-261882451875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4767129e-46AM476712.2 Vitis vinifera contig VV78X131483.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385760.11e-146PREDICTED: zinc-finger homeodomain protein 2-like
SwissprotQ6YXH53e-77ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLM0U6010.0M0U601_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP03390_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39503269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-61homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]