PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP03720_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family TALE
Protein Properties Length: 593aa    MW: 65806 Da    PI: 6.1339
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP03720_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.54.6e-085385761854
                                    HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                       Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                    +Fe+  ++yp+ +++  LA k gLt +qV++WF N R +
  GSMUA_AchrUn_randomP03720_001 538 MFENflHPYPKDNDKHVLAVKSGLTRSQVSNWFINARVR 576
                                    5776679******************************88 PP
2BELL70.53e-23409479272
                           BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                                    +qe ++kk+ Lls+l+ Vd+ Y+++ +q+q vi sF ++   g+++ ++++Al++iS  +++L+ +i++qi
  GSMUA_AchrUn_randomP03720_001 409 FQEANRKKTELLSMLQLVDHGYNRCLDQIQNVITSFICISQSGTSETHARFALRTISALYKSLRKRITSQI 479
                                    58999*****************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.0E-18330477IPR006563POX domain
PfamPF075261.1E-28335476IPR006563POX domain
PROSITE profilePS5007111.256517580IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.7E-25519591IPR009057Homeodomain-like
SuperFamilySSF466896.42E-15520588IPR009057Homeodomain-like
CDDcd000864.07E-10520581No hitNo description
SMARTSM003896.2E-5520584IPR001356Homeobox domain
PfamPF059206.3E-15537576IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MENDVFNGSL PIFNHGHMIV DPVSSYMLSG PLVQSGLPDH NSNRQILAGN PMVSTLQEEA  60
IDSIYLTKSG VMACSDVSFS RNIPRIGNDS VNGPIGNVGL REHLPETSLS AASVANLYSS  120
TNYLVENIIK VGTASTLDLP SEEMTVPAST DIHNSHNSSL SASPHCNFGT QHDLSLLAPK  180
NGTIGCMWNQ NELLDHQVLL SKTFSVVRPS YHVTGSSQPG WNFYEYESNW NFNHPCGNTA  240
RAPGSELSLS LGSCQPSVTD MGNNGDQCSE LSCSAVTQVA SADSVRPPTE FQACNHAIQN  300
PVQDFRSGMT QRETIPCTEK PSFYQGCSLV QLSHMLLGSK YLQAVEEVLS EIATYAVEDL  360
QRVDDSPDEK MSISSSCSTV RELPISVSGE LLLSFGDTEP LAGMDSQKFQ EANRKKTELL  420
SMLQLVDHGY NRCLDQIQNV ITSFICISQS GTSETHARFA LRTISALYKS LRKRITSQIL  480
FISQQPSTEP MKEKERSFES SLLQKQWALQ QLRKSDHQSW RPQRGLPEKS VSVLRAWMFE  540
NFLHPYPKDN DKHVLAVKSG LTRSQVSNWF INARVRLWKP MIEEMYAELN KKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A7e-14526584563Homeobox protein Meis2
3k2a_B7e-14526584563Homeobox protein Meis2
4xrm_A6e-14526584563Homeobox protein Meis2
4xrm_B6e-14526584563Homeobox protein Meis2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018676813.10.0PREDICTED: BEL1-like homeodomain protein 2
RefseqXP_018676814.10.0PREDICTED: BEL1-like homeodomain protein 2
TrEMBLM0U6340.0M0U634_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP03720_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.13e-78homeobox gene 1