PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP03750_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 889aa    MW: 95579.5 Da    PI: 6.7603
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP03750_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.11.7e-06619641123
                                    EEETTTTEEESSHHHHHHHHHHT CS
                        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                    ++C++C+k F+r  nL+ H r H
  GSMUA_AchrUn_randomP03750_001 619 FVCEICNKGFPREQNLQLHRRGH 641
                                    89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF547917.16E-15687IPR004088K Homology domain, type 1
SMARTSM003222.3E-141386IPR004087K Homology domain
PROSITE profilePS5008417.5061481IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.5E-171487IPR004088K Homology domain, type 1
PfamPF000132.9E-151683IPR004088K Homology domain, type 1
CDDcd001059.18E-131681No hitNo description
Gene3DG3DSA:3.30.1370.102.5E-5103187IPR004088K Homology domain, type 1
SMARTSM003221.5E-11206279IPR004087K Homology domain
PROSITE profilePS5008416.688207274IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.104.5E-19208280IPR004088K Homology domain, type 1
CDDcd001059.00E-11210274No hitNo description
SuperFamilySSF547912.78E-14210280IPR004088K Homology domain, type 1
PfamPF000131.1E-13210276IPR004088K Homology domain, type 1
SMARTSM003226.2E-11300373IPR004087K Homology domain
SuperFamilySSF547919.94E-15301374IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.107.9E-17303374IPR004088K Homology domain, type 1
PfamPF000131.4E-12305369IPR004088K Homology domain, type 1
CDDcd001051.19E-11305368No hitNo description
PROSITE profilePS5008414.529306368IPR004088K Homology domain, type 1
SMARTSM003223.7E-11394467IPR004087K Homology domain
PROSITE profilePS5008415.41395462IPR004088K Homology domain, type 1
SuperFamilySSF547916.14E-15397469IPR004088K Homology domain, type 1
CDDcd001058.83E-13398462No hitNo description
PfamPF000133.2E-14399464IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.105.0E-17399468IPR004088K Homology domain, type 1
SMARTSM003229.5E-15475548IPR004087K Homology domain
PROSITE profilePS5008416.772476543IPR004088K Homology domain, type 1
SuperFamilySSF547912.05E-16477558IPR004088K Homology domain, type 1
CDDcd001053.48E-14479543No hitNo description
Gene3DG3DSA:3.30.1370.109.4E-19479550IPR004088K Homology domain, type 1
PfamPF000131.3E-15480545IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.160.603.7E-5618641IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.25E-7618641No hitNo description
PROSITE profilePS5015710.907619641IPR007087Zinc finger, C2H2
SMARTSM003550.0014619641IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280621641IPR007087Zinc finger, C2H2
SMARTSM00355200660690IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.6E-4683716IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.25E-7690715No hitNo description
SMARTSM00355150695715IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 889 aa     Download sequence    Send to blast
MITKSGLPSH DYPGSTKRIE IPNELVGIII GKTGETIKSI RLNSGAKIQV TRNMEAGPNS  60
LTTTVELNGT PEQISSAEKL INDALAEGGF GGSNIISTQE SGDMEPGPEH CHTKTPKDMI  120
GQVLCKVGNT IENMQARSGA RMTIWLLLAS PSHLPSGGMS TESRAYLVGL MGKFEAAKQI  180
VNQIIKGDSG DPGISFAQEL GSVEPIAQKF QMKVPNDKVY AIIGKSGETI KHIRLESGAK  240
IQLTKDTDAG PNSPTTVVEL NGTSQQISSA EKLINDVLAE GDLGCSDVIS AQESGDMEPD  300
VEHCHMKIPK NMVGVIIGES GETIKCIRLQ SGAKIQFPKD TGADSDSLTT TVELYGTIEQ  360
IMSAMKLIDD ALAEGGSVDP GTAFAKESSR MEPGAEWYEM KFPSDKVGAI IGESGETIKR  420
IQLQSGAKIQ FPKDTGADSD SLTTTVTMYG TIEQMRSAEK LINDAIAESR RTEPGSELLE  480
MKLPSDKVGA IIGKSGETIK RIRLQSGAKI QFTEDTGADT DSPTTTVELF GTIEQITSAK  540
KLINDALAKD DSGGCFIGSD STSLDLAFPH CSPNPFPQSS FASPTPNPTK KKRNLPGNPD  600
PDAEVIALSP KTLMTTNRFV CEICNKGFPR EQNLQLHRRG HNLPWKLKQR SSKEVRKKVY  660
LCPEVTCVHH DPSRALGDLT GIKKHFSRKH GEKKWKCDKC SKKYAVQSDW KAHSKICGTR  720
EYRCDCGILF SRRDSFITHR AFCDALAEES ARAMAANPLT NHQALLFSPA AASSEHGRED  780
PVPHPPLPPA FPHALAPSPH MSATALLQKA AEMGATMSRP AHLDMVATSL SATPGGGMND  840
GMTRDFLGLK AFPHRNILDL TGLDPCLTAA AASSSSSAYE QQSMKPWNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-34691752364Zinc finger protein JACKDAW
5b3h_F6e-34691752364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1645657KLKQRSSKEVRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385821.10.0PREDICTED: far upstream element-binding protein 2-like isoform X1
TrEMBLM0U6370.0M0U637_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP03750_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-93indeterminate(ID)-domain 2