PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP04160_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 228aa    MW: 25276.5 Da    PI: 12.2224
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP04160_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00066426123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                   ++C+ C+++Fs+   L  H+r+H
  GSMUA_AchrUn_randomP04160_001  4 HRCKLCHRRFSNGRALGGHMRSH 26
                                   79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.3E-5330No hitNo description
PfamPF139125.4E-8326IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.198431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MERHRCKLCH RRFSNGRALG GHMRSHVAPA PRPMKAQQHL PSPCASSSSF PAADEDSVAP  60
ATTYGLREKS RRRSGLVDPD DTESSFRRRL TRPRRREDPS ADAEPLSSVS DASPDEDVAR  120
CLMLLSRDAW RRSRRPPLDR GGRGRGTSAV RARNTSDRIK LSAATARATR GYSSAHTATG  180
SSPPARLSAG TKDPIFPPPP LLALRRSRSR CRRRRHRRTI PSRSTTVS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6203755e-47JX620375.1 Gossypium hirsutum clone NBRI_GE66602 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385850.13e-73PREDICTED: zinc finger protein ZAT1-like
TrEMBLM0U6781e-155M0U678_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP04160_0011e-156(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16610.18e-16C2H2-like zinc finger protein