PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP04320_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRF
Protein Properties Length: 411aa    MW: 45468.9 Da    PI: 9.2875
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP04320_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.95e-2578122145
                            WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                                    d+epgrCrRtDGKkWRCs+++++g+k+CErH+hrgr+rsrk++e+
  GSMUA_AchrUn_randomP04320_001  78 DPEPGRCRRTDGKKWRCSKDAYPGSKYCERHMHRGRNRSRKPVES 122
                                    79****************************************986 PP
2QLQ63.17.4e-221348237
                            QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                                   +FTa+Q+q+L++Q+l++KyL+a++PvPpeL+ +i++
  GSMUA_AchrUn_randomP04320_001 13 PFTATQWQELEHQALILKYLMAGVPVPPELIIPIRR 48
                                   9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.5E-131248IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.5461348IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.5E-161347IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.04678122IPR014977WRC domain
PfamPF088793.3E-2179121IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MNSFAAVVGG RPPFTATQWQ ELEHQALILK YLMAGVPVPP ELIIPIRRSF ETLPGRYYHP  60
SQPLGIMSYY SYYGKKPDPE PGRCRRTDGK KWRCSKDAYP GSKYCERHMH RGRNRSRKPV  120
ESQTVAPSQT SSSVLTSLSP SASNASGTGV GSFRGITLQP ITGPSNAQSL CFGGASSSQL  180
PMDTGTFGNS LYCLQRKRLI AFIFFLHISE IALFSVLANC NAPCTWETNQ SVKYPRSIDG  240
RSMRSWISWY FSGLKPDADE HSFFSGASGT ARALGVDSSL DSSWRPMPPP VSSFSLSKTH  300
DLSILQNAYP QLQSVQDLGQ VTINSLSRQQ QQHHSFFGSE FGSSEPVKHE TQLLRPFFDE  360
WPKTRDSWSD LEEDRSNRTS FSTTQLSISI PIASSDFSST SSRSPNGGSP S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008813471.11e-141growth-regulating factor 4-like
TrEMBLM0U6940.0M0U694_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP04320_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24633476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.13e-50growth-regulating factor 5