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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | GSMUA_AchrUn_randomP04340_001 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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| Family | Trihelix | ||||||||
| Protein Properties | Length: 220aa MW: 26282.3 Da PI: 6.8025 | ||||||||
| Description | Trihelix family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | trihelix | 41.6 | 3.2e-13 | 1 | 45 | 38 | 86 |
trihelix 38 mrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
mrerg++r+p qCk+kw+nl +ryk ++ + + + ++cp+fd+l+
GSMUA_AchrUn_randomP04340_001 1 MRERGYRRTPDQCKCKWKNLVNRYKGKETADPE----TGRQCPFFDELN 45
89***********************99988887....4678******97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF13837 | 1.2E-11 | 1 | 46 | No hit | No description |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 220 aa Download sequence Send to blast |
MRERGYRRTP DQCKCKWKNL VNRYKGKETA DPETGRQCPF FDELNAVFVE RAKNMQRLLL 60 ESESGASQSK KKPKRVGRDR SSDEISDDDD EDDNDSDDEL LPKGRRKKAD HRGGHQQHRG 120 KAAAAAAAAG SIQELLQEFL QQQQQMEMQW FDMMERRAQE RRMFEQEWRQ SMEKLERERL 180 MLEQAWRERE EQRRMREESR AEKRDALLTT LLNKFIEDDL |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009385878.1 | 1e-158 | PREDICTED: trihelix transcription factor GT-3b-like | ||||
| TrEMBL | M0U696 | 1e-157 | M0U696_MUSAM; Uncharacterized protein | ||||
| STRING | GSMUA_AchrUn_randomP04340_001 | 1e-158 | (Musa acuminata) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP10688 | 30 | 37 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G38250.1 | 1e-15 | Trihelix family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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