PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_AchrUn_randomP04420_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Trihelix

Protein Properties

Length: 229aa MW: 25701.7 Da PI: 4.3822

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_AchrUn_randomP04420_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46.7	8.1e-15	51	126	2	79
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 Wt e l+L++ + m+e+ r+ + ++W+ +s+++ + + rs+ qCk +we+l y+ki+e+e+++ + s + GSMUA_AchrUn_randomP04420_001 51 WTTYELLVLVNETAAMDEDWLRALSSYQKWKMISDNCVALDVIRSSYQCKRRWESLLAGYRKIREWESRHGE--GSYW 126 ********************************************************************9833..3345 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.829	43	107	IPR017877	Myb-like domain
Pfam	PF13837	9.3E-9	50	124	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MEQAGIIQAL PITPMKEKES QRRKMSTDAS ISPRGPASSS RCTRSQAAAD WTTYELLVLV 60 NETAAMDEDW LRALSSYQKW KMISDNCVAL DVIRSSYQCK RRWESLLAGY RKIREWESRH 120 GEGSYWSLDS EEKHNLGLPT SFDPEIFGSM DTIIKPHEDQ AWWGDVDSEN LMDTAGGSED 180 LIVTMEAGML DANGAQDIIV GIYSGGGEQT CNQLNLDFDD CTPCTRRIT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009385915.1	1e-144	PREDICTED: uncharacterized protein LOC103973149
TrEMBL	M0U6A4	1e-170	M0U6A4_MUSAM; Uncharacterized protein
STRING	GSMUA_AchrUn_randomP04420_001	1e-170	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6353	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	4e-35	sequence-specific DNA binding transcription factors