PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP04590_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family AP2
Protein Properties Length: 396aa    MW: 44426 Da    PI: 9.7
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP04590_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.62e-15115174155
                            AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                    s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  GSMUA_AchrUn_randomP04590_001 115 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 174
                                    57*******************666664477446*************************98 PP
2AP246.96.7e-15219268355
                            AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                    y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  GSMUA_AchrUn_randomP04590_001 219 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 268
                                    9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.34E-20115184No hitNo description
PfamPF008472.0E-12115174IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18115184IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-16116183IPR001471AP2/ERF domain
SMARTSM003801.7E-30116188IPR001471AP2/ERF domain
PROSITE profilePS5103219.414116182IPR001471AP2/ERF domain
PRINTSPR003671.4E-6117128IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-18217278IPR016177DNA-binding domain
CDDcd000183.74E-22217278No hitNo description
Gene3DG3DSA:3.30.730.102.0E-18218277IPR001471AP2/ERF domain
SMARTSM003807.1E-33218282IPR001471AP2/ERF domain
PROSITE profilePS5103219.203218276IPR001471AP2/ERF domain
PfamPF008479.3E-10219268IPR001471AP2/ERF domain
PRINTSPR003671.4E-6258278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MDTSHPWLAF SLSQHPALFQ AFSASALHGL LSQHPASLFL SLFLTVAAEA PKLEEFLSSP  60
GDHPLGEQFD GGYDSDLRSI AAGILRASPA EQPESTSLAV ADPKKVMDTL GQRTSIYRGV  120
TRHRWTGRYE AHLWDNSCRR EGQSRKGRQV YLGGYDKEEK AARAYDLAAL KYWGPNTTTN  180
FPVSDYEEEL QEMKNMTRQE FVAALRRRSS GFSRGASMYR GVTRHHQHGR WQARIGRVAG  240
NKDLYLGTFS TQEEAAEAYD IAAIKFRGLN AVTNFDMSRY DVERILNSDL PVGGASSKAS  300
RVPEPPSPAS YLRDYCSCCS SVEETSRWCL ASSWPLRTCT VSFWIAKYRA MVHRRSAKVR  360
AAVSKQGRGR AFFLRARRMD RKESLASLST WQVGEL
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385919.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-131AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLM0U6C10.0M0U6C1_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP04590_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-116AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]