PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_AchrUn_randomP04880_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

MYB_related

Protein Properties

Length: 195aa MW: 21621.1 Da PI: 6.2432

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_AchrUn_randomP04880_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.9	4.6e-13	76	121	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT +E+ l++++ ++G g+W+ I+r ++Rt+ q+ s+ qky GSMUA_AchrUn_randomP04880_001 76 QAWTVDEHRLFLRGLDKYGRGDWRNISRNCVLTRTPTQVASHAQKY 121 79*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.86E-5	7	63	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.782	70	126	IPR017930	Myb domain
SuperFamily	SSF46689	4.38E-16	70	127	IPR009057	Homeodomain-like
SMART	SM00717	2.2E-9	74	124	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-10	74	121	IPR009057	Homeodomain-like
Pfam	PF00249	1.5E-10	76	121	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	1.6E-15	76	125	IPR006447	Myb domain, plants
CDD	cd00167	1.03E-9	77	122	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MEAEGEGCWN WEKNKAFEIT LAAYTKDHIN PWEKIAAAVP GTKLEEIKHH HKLLSNDVNS 60 IESGVLEGYQ KRSKGQAWTV DEHRLFLRGL DKYGRGDWRN ISRNCVLTRT PTQVASHAQK 120 YFLRQSSVST RTRTSILDIS SADSEEDLPV SITYALGTPA DPAAAAADQQ ASISGMGVSV 180 SESQVFAASN IEFYF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009385960.1	1e-128	PREDICTED: transcription factor DIVARICATA-like
Swissprot	Q9FNN6	1e-41	SRM1_ARATH; Transcription factor SRM1
TrEMBL	M0U6F0	1e-144	M0U6F0_MUSAM; Uncharacterized protein
STRING	GSMUA_AchrUn_randomP04880_001	1e-145	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP842	30	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	3e-39	MYB family protein

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]