PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP05930_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 109aa    MW: 12401 Da    PI: 9.9024
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP05930_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.1e-0873109135
                                    TSSS-H..HHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS
                Myb_DNA-binding   1 rgrWTt..eEdellvdavkqlGggtWktIartmgkgR 35 
                                    +g+WT    Ed  lv +vk++G g+W+++ ++mg+gR
  GSMUA_AchrUn_randomP05930_001  73 KGPWTSasAEDAVLVGYVKKYGEGNWNSVQKHMGLGR 109
                                    577775226*************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.12668109IPR017930Myb domain
SuperFamilySSF466892.54E-670108IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-971109IPR009057Homeodomain-like
PfamPF002491.3E-573109IPR001005SANT/Myb domain
CDDcd001673.56E-475106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MIRIENFRSS EVKYAAENSW RPELRRPILF WKMSRMSNES DERLIPRDQI DSPSIEQGCS  60
TGSVKGGNHM LKKGPWTSAS AEDAVLVGYV KKYGEGNWNS VQKHMGLGR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009387062.17e-30PREDICTED: transcription factor GAMYB-like
RefseqXP_009387063.17e-30PREDICTED: transcription factor GAMYB-like
RefseqXP_009387064.17e-30PREDICTED: transcription factor GAMYB-like
RefseqXP_018677225.17e-30PREDICTED: transcription factor GAMYB-like
SwissprotA2WW871e-19GAM1_ORYSI; Transcription factor GAMYB
TrEMBLM0U6Q43e-75M0U6Q4_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP05930_0014e-76(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11440.13e-15myb domain protein 65