PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_AchrUn_randomP07340_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

DBB

Protein Properties

Length: 278aa MW: 30190.9 Da PI: 6.584

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_AchrUn_randomP07340_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.3	2.7e-07	4	43	5	38
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ ++++ ++ fC ++ lC+ C H+ H+ GSMUA_AchrUn_randomP07340_001 4 LCDVCGKEGASVFCCADEAALCDACDRRVHRAnklvgkHR 43 7*****************************7666777776 PP
2	zf-B_box	22.3	2.8e-07	56	90	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.H 37 + C+ ++ek+ lfC++++ lC+dC + H+ H GSMUA_AchrUn_randomP07340_001 56 PACDICQEKRGFLFCQEDRAILCRDCDASVHSAnH 90 68*****************************5565 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.125	1	47	IPR000315	B-box-type zinc finger
SMART	SM00336	3.5E-11	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	3.68E-8	3	47	No hit	No description
Pfam	PF00643	7.1E-6	4	44	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.168	53	100	IPR000315	B-box-type zinc finger
SMART	SM00336	3.1E-12	53	100	IPR000315	B-box-type zinc finger
Pfam	PF00643	4.8E-6	55	90	IPR000315	B-box-type zinc finger
CDD	cd00021	2.97E-9	56	88	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009641	Biological Process	shade avoidance
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MKVLCDVCGK EGASVFCCAD EAALCDACDR RVHRANKLVG KHRRFSLSAP SAQSHPACDI 60 CQEKRGFLFC QEDRAILCRD CDASVHSANH LTMKHNRFIL TGVQLSAAPM PTSPSPESVA 120 EVKTSTKSTV PKSNQNKASV ADGSTPITST ITSSSSISEY LIKTCPGWRV EDLLVDDPAF 180 GVEDFAKGDE LLPFLEADLD SGGLDALAEK FPVWAPHVPQ YPPPPGLSSA ADGSGHHQPW 240 RGSKEAGRER WSEDVFTVPQ ISPASTPSKR PRNSFWYY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009386174.1	0.0	PREDICTED: B-box zinc finger protein 20
TrEMBL	M0U745	0.0	M0U745_MUSAM; Uncharacterized protein
STRING	GSMUA_AchrUn_randomP07340_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2392	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	1e-51	salt tolerance homolog2