PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_AchrUn_randomP07870_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

G2-like

Protein Properties

Length: 342aa MW: 37802 Da PI: 8.3627

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_AchrUn_randomP07870_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100	1.6e-31	185	238	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+v +Ltl+hvkSHLQ+YR+ GSMUA_AchrUn_randomP07870_001 185 PRMRWTTALHARFVHAVELLGGHERATPKSVLELMDVRDLTLAHVKSHLQMYRT 238 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.97E-15	182	239	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.6E-28	183	238	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.4E-23	185	238	IPR006447	Myb domain, plants
Pfam	PF00249	2.5E-7	186	237	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MELFSAAAAA AAADLSLQIS SLEATASSWR KPGDENMELG FRCRNLDSTT TTNKNRTAAS 60 AARATASELS LANPRAAVSA ATSNDTFHRS QPRHYHHHLQ YDHLQYHHHH PLHHQEQSWL 120 EPITGIPIYQ HPPFFPAVAP HQQHHLCGSP SSSNHALTHL VASQGLSRSR YLPPRFPAKR 180 SMRAPRMRWT TALHARFVHA VELLGGHERA TPKSVLELMD VRDLTLAHVK SHLQMYRTLK 240 NTDRPAVPSG QSDAIANGSM GENSDDNPVG IHNLHLSESS SQQRGSIDNG TARSSTAGSM 300 QHYEQDMQPK SFEMFLELNS PSFSETSSSS KPNLEITLGR PH

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MELFSAAAAA AAADLSLQIS SLEATASSWR KPGDENMELG FRCRNLDSTT TTNKNRTAAS  60
AARATASELS LANPRAAVSA ATSNDTFHRS QPRHYHHHLQ YDHLQYHHHH PLHHQEQSWL  120
EPITGIPIYQ HPPFFPAVAP HQQHHLCGSP SSSNHALTHL VASQGLSRSR YLPPRFPAKR  180
SMRAPRMRWT TALHARFVHA VELLGGHERA TPKSVLELMD VRDLTLAHVK SHLQMYRTLK  240
NTDRPAVPSG QSDAIANGSM GENSDDNPVG IHNLHLSESS SQQRGSIDNG TARSSTAGSM  300
QHYEQDMQPK SFEMFLELNS PSFSETSSSS KPNLEITLGR PH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-15	186	240	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-15	186	240	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-15	186	240	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-15	186	240	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-15	186	240	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-15	186	240	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-15	186	240	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-15	186	240	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018676953.1	0.0	PREDICTED: probable transcription factor KAN2
Swissprot	Q9C616	4e-51	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	M0U798	0.0	M0U798_MUSAM; Uncharacterized protein
STRING	GSMUA_AchrUn_randomP07870_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4721	36	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	2e-52	G2-like family protein

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]