PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_AchrUn_randomP07900_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

MYB

Protein Properties

Length: 313aa MW: 34387 Da PI: 7.5053

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_AchrUn_randomP07900_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.6	4.5e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W ++Ed++l d+++++G g+W++ ++ g+ R++k+c++rw +yl GSMUA_AchrUn_randomP07900_001 14 KGSWMPDEDKKLTDYIQKHGQGNWRRLPKLAGLDRCGKSCRLRWTNYL 61 799*******************************************97 PP
2	Myb_DNA-binding	56.3	7.5e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T eE++l+++++ lG++ W+tIa +++ gRt++++k++w++ GSMUA_AchrUn_randomP07900_001 67 RGKFTDEEEKLIIQLHSVLGNK-WSTIATRLP-GRTDNEIKNFWNTT 111 89******************.*****.**********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.612	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	4.49E-29	11	108	IPR009057	Homeodomain-like
SMART	SM00717	2.3E-12	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-14	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-23	15	68	IPR009057	Homeodomain-like
CDD	cd00167	5.00E-10	16	61	No hit	No description
PROSITE profile	PS51294	27.029	62	116	IPR017930	Myb domain
SMART	SM00717	6.0E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	5.4E-16	67	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-26	69	116	IPR009057	Homeodomain-like
CDD	cd00167	1.89E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MGRPPCCDEH GVKKGSWMPD EDKKLTDYIQ KHGQGNWRRL PKLAGLDRCG KSCRLRWTNY 60 LRPDIRRGKF TDEEEKLIIQ LHSVLGNKWS TIATRLPGRT DNEIKNFWNT TLRKKLLQMG 120 IDPVTHQPRT DLSLLSSSTS RLDSSLQLQV DAARLIELHL VQNLVRLLTC SSPAPNLDLI 180 RLLGSAVPKN HHQVNDLFAL TPQLSSLVNG SLGLPSLAPV GQQILSVNGG QTAAPSSADD 240 SSSESMMTSK DCGTNSGTIP ASVTAPSLVS SPENMSKNET ISLEGSTNTP TSPPFEAWDA 300 LNLDDFGWKE IIE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-28	14	116	27	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009386242.1	0.0	PREDICTED: myb-related protein 308-like
Swissprot	Q9S9Z2	2e-76	MYB93_ARATH; Transcription factor MYB93
TrEMBL	M0U7A1	0.0	M0U7A1_MUSAM; Uncharacterized protein
STRING	GSMUA_AchrUn_randomP07900_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1126	37	132

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	4e-74	myb domain protein 93

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]