PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP08690_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 202aa    MW: 22116.5 Da    PI: 6.5036
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP08690_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.4e-193483255
                            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                    y+GVr++  +g+WvAeIr+p   + r +r +lg+f ta eAa+a+++a+++l+g
  GSMUA_AchrUn_randomP08690_001 34 TYRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFSTALEAAQAYDNAARSLYG 83
                                   69****999.**********8...3.35***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.02E-283393No hitNo description
Gene3DG3DSA:3.30.730.101.5E-293493IPR001471AP2/ERF domain
PROSITE profilePS5103220.9563491IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-203492IPR016177DNA-binding domain
PfamPF008471.8E-123483IPR001471AP2/ERF domain
SMARTSM003801.6E-323497IPR001471AP2/ERF domain
PRINTSPR003674.3E-103546IPR001471AP2/ERF domain
PRINTSPR003674.3E-105773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MGPQEKQPRK CCPLRRSRKG CMKGKGGPEN QACTYRGVRQ RTWGKWVAEI REPNRGARLW  60
LGTFSTALEA AQAYDNAARS LYGDCARLNL SDSRPSSVGD NSTGSTPPPP AAALVKPDFR  120
CSSSWSNETS TGDSQASFPD SIGLPAAHFY AGGLYSFDDY VSGLPKPEDF GLEAFHSVPF  180
LDEQELDTQF MNFEPLQVSS YS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-1535901571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009386363.11e-149PREDICTED: dehydration-responsive element-binding protein 2C-like
SwissprotQ84ZA13e-56DRE2C_ORYSJ; Dehydration-responsive element-binding protein 2C
TrEMBLM0U7H91e-148M0U7H9_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP08690_0011e-149(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55103454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.14e-41ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]