PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP09790_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 234aa    MW: 27395.6 Da    PI: 11.6383
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP09790_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-1873121355
                            AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                    y+G+r+++ +g+W+AeIrdp     +  r++lg+f taeeAa+a+++ +++++g
  GSMUA_AchrUn_randomP09790_001  73 YRGIRQRP-WGKWAAEIRDPM----KgVRVWLGTFATAEEAARAYDREARRIRG 121
                                    9*******.**********84....35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.27E-2272130IPR016177DNA-binding domain
PROSITE profilePS5103223.39372129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-3272130IPR001471AP2/ERF domain
SMARTSM003806.2E-4072135IPR001471AP2/ERF domain
CDDcd000183.21E-3173130No hitNo description
PRINTSPR003678.8E-127384IPR001471AP2/ERF domain
PfamPF008471.9E-1173121IPR001471AP2/ERF domain
PRINTSPR003678.8E-1295111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MCGGAIISDF IPQRNHHRHC PDPDHLLSAS DLWPDSFHPH SVSTQDKGGV LMASSAACFV  60
ISVPRKRGRK NLYRGIRQRP WGKWAAEIRD PMKGVRVWLG TFATAEEAAR AYDREARRIR  120
GKKAKVNFPN EVEPEETDNS VPCNPVRNFI QPKRRRRRRG QQQMMRWSQG MEWRRVIRRS  180
LQAWRCFGSS TTFCRRDGPI RLLDRMVFDT YGFPMLVQWQ ILFRILFSRV GCRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2273136670ATERF1
3gcc_A4e-2273136670ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152157KRRRRR
2152158KRRRRRR
3153158RRRRRR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009386485.17e-95PREDICTED: ethylene-responsive transcription factor ERF071-like
SwissprotO222595e-38ERF71_ARATH; Ethylene-responsive transcription factor ERF071
TrEMBLM0U7T91e-172M0U7T9_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP09790_0011e-173(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115852836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.12e-30ERF family protein
Publications ? help Back to Top
  1. Gasch P, et al.
    Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
    Plant Cell, 2016. 28(1): p. 160-80
    [PMID:26668304]
  2. Yao Y,Chen X,Wu AM
    ERF-VII members exhibit synergistic and separate roles in Arabidopsis.
    Plant Signal Behav, 2017. 12(6): p. e1329073
    [PMID:28537474]
  3. Eysholdt-Derzsó E,Sauter M
    Root Bending Is Antagonistically Affected by Hypoxia and ERF-Mediated Transcription via Auxin Signaling.
    Plant Physiol., 2017. 175(1): p. 412-423
    [PMID:28698356]
  4. Eysholdt-Derzsó E,Sauter M
    Hypoxia and the group VII ethylene response transcription factor HRE2 promote adventitious root elongation in Arabidopsis.
    Plant Biol (Stuttg), 2019. 21 Suppl 1: p. 103-108
    [PMID:29996004]