PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP10320_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family AP2
Protein Properties Length: 351aa    MW: 39247.2 Da    PI: 4.8444
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP10320_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.9e-17140189155
                            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                    s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  GSMUA_AchrUn_randomP10320_001 140 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 189
                                    78*******************......55************************997 PP
2AP244.44e-14232282155
                            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                    s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ +++g
  GSMUA_AchrUn_randomP10320_001 232 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIRYNG 282
                                    89********.7******5553..2.26**********99************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-16140197IPR016177DNA-binding domain
PfamPF008473.5E-9140189IPR001471AP2/ERF domain
PROSITE profilePS5103217.794141197IPR001471AP2/ERF domain
SMARTSM003801.4E-31141203IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-17141197IPR001471AP2/ERF domain
CDDcd000183.60E-11141196No hitNo description
PfamPF008472.5E-9232282IPR001471AP2/ERF domain
CDDcd000184.99E-24232292No hitNo description
SuperFamilySSF541716.28E-17232291IPR016177DNA-binding domain
SMARTSM003805.3E-29233296IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-16233290IPR001471AP2/ERF domain
PROSITE profilePS5103215.949233290IPR001471AP2/ERF domain
PRINTSPR003672.0E-6234245IPR001471AP2/ERF domain
PRINTSPR003672.0E-6272292IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MLNLNLPWSG ELTAFEGKPV EEGSGAGQMD DSGTSNSSVL NAEASVDVAD EDSCSAQPAA  60
AFEFSILKNS ASVERENEVE EEMFEEDQRR PGLLTRELFP PAPVVPHVPQ LPLQQQQQLQ  120
QQQQQQQAKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY  180
DRAAIKFRGV DADINFNLCD YEEDLIQMKN LSKEEFVHIL RRQSTGFSRG SSKYRGVTLH  240
KCGRWEARMG QFLGKKYIYL GLFDSEIEAA RAYDKAAIRY NGKEAVTNFE PSAYEGEQLS  300
EGNSEGHDLD LNLSISQPSV NSPNGDQNPL GSSQFKASDA DTARQGEREE L
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009386544.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotB8AXC31e-114AP21_ORYSI; APETALA2-like protein 1
TrEMBLM0U7Z10.0M0U7Z1_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP10320_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-103related to AP2.7