PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_AchrUn_randomP10470_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

LBD

Protein Properties

Length: 257aa MW: 26437.9 Da PI: 8.3003

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_AchrUn_randomP10470_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.8	5.1e-40	43	143	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79 +C aCk+lrrkC ++C++apyf aeq +++fa+vhk+FGasn +kll ++p ++r+da+ +++yeA+ar+rdPvyG+v++ GSMUA_AchrUn_randomP10470_001 43 PCGACKFLRRKCMAGCIFAPYFDAEQgAARFAAVHKVFGASNASKLLLHIPAHKRHDAVITICYEAQARLRDPVYGCVAH 122 7*********************9989************************************************ PP DUF260 80 ilklqqqleqlkaelallkee 100 i++lqqq+ +l+ael++l+++ GSMUA_AchrUn_randomP10470_001 123 IFALQQQVVSLQAELSYLQAH 143 **************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.781	42	144	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-38	43	141	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MSGNVSPSLS VGGGSGSVGG GVGGGGAGGG AGGGGGGGGG LGPCGACKFL RRKCMAGCIF 60 APYFDAEQGA ARFAAVHKVF GASNASKLLL HIPAHKRHDA VITICYEAQA RLRDPVYGCV 120 AHIFALQQQV VSLQAELSYL QAHLATLELP SPPPPPPPPS LLAPTPFSTS DLTSASSLPS 180 TGDLSTMFDP QVQPEWPLQQ QQQQQQRPPT ELRPHLSNRA RNVLGNPGCG GGDLQALARE 240 LLDRHRSTTS EPPPISK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-36	39	144	7	111	LOB family transfactor Ramosa2.1
5ly0_B	5e-36	39	144	7	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269\|PubMed:19088331}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009386566.1	0.0	PREDICTED: LOB domain-containing protein 30-like
Refseq	XP_018677083.1	0.0	PREDICTED: LOB domain-containing protein 30-like
Swissprot	O81323	4e-70	LBD30_ARATH; LOB domain-containing protein 30
TrEMBL	M0U806	0.0	M0U806_MUSAM; Uncharacterized protein
STRING	GSMUA_AchrUn_randomP10470_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3346	37	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45420.1	4e-63	LOB domain-containing protein 18

Publications ? help Back to Top
Rast-Somssich MI, et al. The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin. J. Exp. Bot., 2017. 68(11): p. 2741-2755 [PMID:28472464] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]