PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_AchrUn_randomP11120_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bHLH

Protein Properties

Length: 273aa MW: 31152.9 Da PI: 7.2512

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_AchrUn_randomP11120_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22	2.9e-07	190	230	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P K++ a++L +A +Y+k L GSMUA_AchrUn_randomP11120_001 190 ARHRRERISERLRMLQKLVPGG-----SKMDTATMLDEAANYLKFL 230 599***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.545	181	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-12	187	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.85E-14	187	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.92E-9	187	235	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.0E-11	187	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-4	191	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MIDPFCCPSE NFGSFDQLQV NIDNNDEDHF DNFSSTKSTC RLSCSATISS AEFETHGLFD 60 YHIPNLDRQN SFIPDVPGVE SSREKYIAKR KLEDYEKEGE NCCKKGGFEI SFRNAPRQKK 120 LRSEKNSGPS SINFSQQSYY ELDTEAIAQV KEMIYRAAAL RPVHLGLEEA SEKPKRKNVR 180 ISSDPQTVAA RHRRERISER LRMLQKLVPG GSKMDTATML DEAANYLKFL KSQVRALETL 240 GNEHDPMDRY TVPFGSTFHS GFSHAKPFLH REP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029119380.1	2e-89	transcription factor bHLH87
Swissprot	Q8S3D2	1e-50	BH087_ARATH; Transcription factor bHLH87
TrEMBL	M0U871	0.0	M0U871_MUSAM; Uncharacterized protein
STRING	GSMUA_AchrUn_randomP11120_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1546	37	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	5e-44	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]