PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_AchrUn_randomP11290_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Nin-like

Protein Properties

Length: 189aa MW: 21715 Da PI: 8.8243

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_AchrUn_randomP11290_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	86.2	2.8e-27	72	120	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + ++++++yF++pi++AAke++v+lTvLK++CR++GI+RWPhRk+ksl GSMUA_AchrUn_randomP11290_001 72 GLGFDEIKNYFYMPITKAAKEMNVGLTVLKKRCRELGIARWPHRKMKSL 120 6889*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.154	55	143	IPR003035	RWP-RK domain
Pfam	PF02042	6.4E-22	73	120	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MESDDIDLDS FAWSCNLSSD AVDVRLDPLP LPACDLPFGP FETSGEGGDV PIWDGRKTSE 60 KRGCGRASRL NGLGFDEIKN YFYMPITKAA KEMNVGLTVL KKRCRELGIA RWPHRKMKSL 120 KSLVRNVQAM GKGTFEEDGV RKELETLEEH RRLMEENPEI QLTERTKKLR QACFKANYKR 180 RRLLHHPCF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	178	182	KRRRL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009396639.1	2e-78	PREDICTED: protein RKD1-like
Swissprot	Q9LVU8	1e-39	RKD4_ARATH; Protein RKD4
TrEMBL	M0U888	1e-138	M0U888_MUSAM; Uncharacterized protein
STRING	GSMUA_AchrUn_randomP11290_001	1e-139	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4590	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	4e-42	RWP-RK domain-containing protein

Publications ? help Back to Top
Azpeitia E,Davila-Velderrain J,Villarreal C,Alvarez-Buylla ER Gene regulatory network models for floral organ determination. Methods Mol. Biol., 2014. 1110: p. 441-69 [PMID:24395275]