PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP11460_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 212aa    MW: 23115 Da    PI: 7.4104
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP11460_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-055173123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                   y+C+ C++ F++   L  H+++H
  GSMUA_AchrUn_randomP11460_001 51 YSCSFCSREFKTAQALGGHMNVH 73
                                   99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.64E-64878No hitNo description
Gene3DG3DSA:3.30.160.605.9E-44977IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.9E-65174IPR007087Zinc finger, C2H2
SMARTSM003550.00555173IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.4685178IPR007087Zinc finger, C2H2
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MERCGRVTTD NCSSNSSSKG KEPWMSYTHT AKGGPLPGSF LAGFSWPPRS YSCSFCSREF  60
KTAQALGGHM NVHRRDKARL RQSPPPGPLP FDLNPNPSPG GEPVPFSSAP NIPNLNMPPP  120
SSSSGDKIFL APNTLPSMTS PLTHFSFSRG DDLNKMETVK ALFGTGEAKD LMEKDTGNEL  180
QQGREVVRLE LEIGICGDRK DELDLELRLG YT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-124673229superman protein
2l1o_A4e-124673229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009388401.11e-155PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLM0U8A51e-154M0U8A5_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP11460_0011e-155(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46673065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.13e-22C2H2 family protein