PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP12130_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bZIP
Protein Properties Length: 492aa    MW: 54527.6 Da    PI: 6.5908
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP12130_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.32.1e-10204247245
                                    XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                         bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                                    +++k  rr+++NReAAr+sR++Kka+i++Le    +L +  ++L
  GSMUA_AchrUn_randomP12130_001 204 SDIKTLRRLAQNREAARKSRLKKKAYIQQLESSNLTLNKLEQEL 247
                                    57899**************************9877777766655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.8E-8196250No hitNo description
SMARTSM003386.4E-8203266IPR004827Basic-leucine zipper domain
PfamPF001702.0E-7205247IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.967205249IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.44E-7207250No hitNo description
PROSITE patternPS000360210225IPR004827Basic-leucine zipper domain
PfamPF141442.7E-31290365IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MFPVAVSSSC QSIDSVHSFW IYVLQILENK WILIGRDVLE LNICKVDRFG TTEGNILHTS  60
RGSNVRTLEK SNIFQIEEAT DLSTNPLPNK KSGDLNLKTS GLSVASDPLQ FGVYDSLVAS  120
SGMTLLAKRA GTLAVTIQKA HQHTLLSSSS AHIENWGEST MADTSPWTDT STDVDTDEKY  180
QTFEERQVAD VAASDSSDKS KDKSDIKTLR RLAQNREAAR KSRLKKKAYI QQLESSNLTL  240
NKLEQELQRA RQQGIFISSS GDQSHSMGGN GALAFDMEYA RWLEEQNQQA KELRAAANSH  300
ASDDVLRVIV DDVMKHYDKL FRIKSVAAKA DVFHILSGMW MMPAERCFLW LGGFRSSELL  360
KLLASHLEPL AEQQLVGICN LQQSSQQAED ALSQGMEALQ QSLSETLVSG SLGSAGSSGN  420
IANYMGQMAM AMGKLGTLEN FLCQADNLRQ QTLQQLQRIL TTRQSARALL AIHDYFSRLR  480
ALSSLWLARP QE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018677126.10.0PREDICTED: transcription factor TGA2.1-like isoform X1
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLM0U8H20.0M0U8H2_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP12130_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-134TGACG motif-binding factor 6