PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_AchrUn_randomP12770_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bHLH

Protein Properties

Length: 212aa MW: 23661.7 Da PI: 5.7702

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_AchrUn_randomP12770_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.6	6e-05	3	48	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + erE+ Rd++N+ f eL +l ++ + + Ka+iL +++ +++L GSMUA_AchrUn_randomP12770_001 3 KAEREKLKRDQLNELFLELGHVLEPD----RQNNCKASILGDTTRVLRDL 48 679*****************999997....68899999999999988876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.607	1	48	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.01E-9	3	62	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-6	4	67	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.003	4	54	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MHKAEREKLK RDQLNELFLE LGHVLEPDRQ NNCKASILGD TTRVLRDLFA QVETLRKENA 60 ALLTESRYVT VERNELKDEN NALQAEISQL QTELQGRSLS VTMWNNNTNS SSFTQPQPTA 120 TVLPMQQQPI IIGSVQANPV RELQLFPVER ITTPPSTPPA PPSQVTRPHA RYPAPLDLWP 180 GQLLSTLPRT SQEEICGSSS ISTGSKEGSD KV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009386792.1	1e-154	PREDICTED: transcription factor bHLH47 isoform X2
TrEMBL	M0U8N6	1e-153	M0U8N6_MUSAM; Uncharacterized protein
STRING	GSMUA_AchrUn_randomP12770_001	1e-154	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2481	38	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	6e-34	bHLH family protein