PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_AchrUn_randomP13230_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Dof

Protein Properties

Length: 279aa MW: 29919.4 Da PI: 8.5494

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_AchrUn_randomP13230_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.5	3.3e-39	37	97	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k++ +kcprCdstntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk+k+ s GSMUA_AchrUn_randomP13230_001 37 KQQPVKCPRCDSTNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGILRNVPVGGGCRKSKRPS 97 7899*****************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-25	35	90	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.6E-33	39	95	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	41	95	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	43	79	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MQDFPPLHGR VFGGGGGARA EFSRLVGYTA AVASVQKQQP VKCPRCDSTN TKFCYYNNYN 60 LSQPRHFCKS CRRYWTKGGI LRNVPVGGGC RKSKRPSSSS SSKPYSKPSP ATADKDHQSR 120 SLRSSTSRCS SDSSSLNGTA SSSAPYPDPT LLNSQISISN PNPPFETPLP VDPPLRPAPD 180 IYLDPVAETL MAVPGSMQVF CFSDPSPTQE KPSEGIRPGF EDQTVRVDPM PGGTGGGLAA 240 LNWSGSVDPT LLDLVSAVDP AAYWNQSHWG GADPTFYLP

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00570	DAP	Transfer from AT5G60850	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM476036	4e-39	AM476036.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X057671.24, clone ENTAV 115.
GenBank	FQ383028	4e-39	FQ383028.1 Vitis vinifera clone SS0ABG34YI09.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009386833.1	0.0	PREDICTED: dof zinc finger protein DOF5.4-like
TrEMBL	M0U8T2	0.0	M0U8T2_MUSAM; Uncharacterized protein
STRING	GSMUA_AchrUn_randomP13230_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6496	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	4e-31	OBF binding protein 4