PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_AchrUn_randomP13420_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

SRS

Protein Properties

Length: 322aa MW: 33640.6 Da PI: 8.1915

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_AchrUn_randomP13420_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	211.3	2.5e-65	110	266	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskk 82 gt++CqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaa+rrerq +aaa +sa+++a+k++r +++ GSMUA_AchrUn_randomP13420_001 110 GGTSTCQDCGNQAKKDCSHRRCRTCCKSRGFECSTHVKSTWVPAARRRERQVSAAAA----GSSASTSAPKKPRLV-ASQ 184 57899*******************************************9888776....444567889999976.777 PP DUF702 83 qsalsstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGl 152 + ++s+t++s+++++++++t+s lP++v+++avf+cvrv+s+ddge+e+aY++ v+igG vfkG+LydqGl GSMUA_AchrUn_randomP13420_001 185 TGTASHTSTSNTTPPRSFDTTSshqdanvkesLPAHVRAPAVFKCVRVTSIDDGEDEYAYHAMVKIGGRVFKGFLYDQGL 264 888899999****99999999****************************************************9 PP DUF702 153 ee 154 ++ GSMUA_AchrUn_randomP13420_001 265 DD 266 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.4E-60	112	265	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	7.2E-27	114	156	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	7.8E-26	217	264	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MVVLASAASF HQQHHHESLL ASAAAEQHPI IPLLAAAPCL VEDDNPAARA KPGGIHLWQP 60 VLPQPPHHLP PAHGSNPNPN VTLSNYLRKP VPMLDPTGIL AGAGAVAAGG GTSTCQDCGN 120 QAKKDCSHRR CRTCCKSRGF ECSTHVKSTW VPAARRRERQ VSAAAAGSSA STSAPKKPRL 180 VASQTGTASH TSTSNTTPPR SFDTTSSHQD ANVKESLPAH VRAPAVFKCV RVTSIDDGED 240 EYAYHAMVKI GGRVFKGFLY DQGLDDGGSH ADDAKDAIPN ISELHLGNRN GGASSSSPML 300 PSDVFGGSGG LMGGTNYGNQ MN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC104710	4e-36	AC104710.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1286_E05, complete sequence.
GenBank	AC136219	4e-36	AC136219.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0073E05, complete sequence.
GenBank	AP014961	4e-36	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBank	CP012613	4e-36	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009386850.1	0.0	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	2e-70	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	M0U8V1	0.0	M0U8V1_MUSAM; Uncharacterized protein
STRING	GSMUA_AchrUn_randomP13420_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3579	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	3e-70	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]