PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP14020_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bZIP
Protein Properties Length: 346aa    MW: 38005.9 Da    PI: 6.5141
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP14020_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.22.8e-11151209563
                                    CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                         bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                    kr++r   NR +A rs +RK  +i eLe+kvk+L++e ++L  +l  l+   a l +e+
  GSMUA_AchrUn_randomP14020_001 151 KRAKRILANRQSAARSKERKAYYISELERKVKTLQTEATTLSAQLTLLQRDTAGLSAEN 209
                                    9**********************************************999888887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.7E-14147211IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.864149212IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.14E-11151203No hitNo description
PfamPF001706.6E-10151208IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.9E-11151205No hitNo description
CDDcd147031.57E-22152203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MQTRGPDPPP SPNPIPDHRN LPSNESPVAP GPLPAEAAGA PPSMFPVPHH RRARSELAFR  60
LPDDLDLRGA VPVDEIGSED DLFCTFMDID KIGSGCAEEA KPRHRHSVSV DGSSMTSSAT  120
MRREGLSGEV METKKAMTPE QLAELAVIDP KRAKRILANR QSAARSKERK AYYISELERK  180
VKTLQTEATT LSAQLTLLQR DTAGLSAENT ELKLQLQAME LQAQLRDALS EALKQEVQRL  240
KIATGEVSKP DESCNIGQHS ALYSSSFFTL PQQQPIHLQA IQFQPQFQHL QPGLLNQHMI  300
SHPNDLPQVM QQHPLGRLQG LDINNGAHMV KSESSTVSVS ESSSTF
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00303DAPTransfer from AT2G40620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009386932.10.0PREDICTED: transcription factor RF2b-like
SwissprotQ6S4P41e-111RF2B_ORYSJ; Transcription factor RF2b
TrEMBLM0U9110.0M0U911_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP14020_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26833683
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.11e-56bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Dai S,Zhang Z,Bick J,Beachy RN
    Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus.
    J. Gen. Virol., 2006. 87(Pt 3): p. 715-22
    [PMID:16476995]
  3. Liu Y,Dai S,Beachy RN
    Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription.
    Biochem. J., 2007. 405(2): p. 243-9
    [PMID:17371296]
  4. Dai S, et al.
    Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6
    [PMID:19104064]