PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP14780_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 331aa    MW: 35091.5 Da    PI: 5.7933
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP14780_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.32.4e-07296320730
                                    HHHHHHHHHHHHHHHHHHCTSCC.C CS
                            HLH   7 erErrRRdriNsafeeLrellPk.a 30 
                                    ++ErrRR+++N+++  Lr+++Pk +
  GSMUA_AchrUn_randomP14780_001 296 MAERRRRKKLNDRLYMLRSVVPKiS 320
                                    79********************944 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-7287330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.22289331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-5295320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-7296330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.56E-6296322No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MLSRIHGVVW AEDGGEEEDA ASWTRANTPS ASGEAMGESK DELGLPSFKS MLDDDWYLGG  60
GATSNPATST AAHYPFEVFQ AHRDVAFPSN PKPHEALLLP VVDDLDQSQP FFTAKSAFAS  120
LFGAVCSNPF DAGLDLGCDA PGFLPAPQVS NTRVLMNRGG GGGGGGILGF AGMVAGEQLG  180
CPDLSSGAEF AGSRLLLPSE NCDGSISGVA VGSMGFDNFD NSPFLNRSKL LRPLEIFPPV  240
GAQPTLFQKR AAAALRQNPA AAGKKEENEK KRKGNEDEEM DDGSGKKKGL PAKNLMAERR  300
RRKKLNDRLY MLRSVVPKIS KVKSSSPTVL C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1285303KKKGLPAKNLMAERRRRKK
2297304ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1575738e-47KC157573.1 Musa AB Group inducer of CBF expression 1-5 (ICE1-5) mRNA, complete cds, alternatively spliced.
GenBankKC1575748e-47KC157574.1 Musa AB Group inducer of CBF expression 1-6 (ICE1-6) mRNA, complete cds, alternatively spliced.
GenBankKM3791338e-47KM379133.1 Musa ABB Group cultivar dajiao inducer of CBF expression 1 (ICE1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009387027.10.0PREDICTED: transcription factor ICE1-like
TrEMBLM0U9870.0M0U987_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP14780_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164637101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-16bHLH family protein