PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP14860_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 247aa    MW: 28424.5 Da    PI: 6.4984
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP14860_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.4e-1367118255
                                    HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                            HLH   2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                    +  hn+ Er RR++iN+ ++ Lr llP+ +   +sk ls   +  ++ +YI +Lq
  GSMUA_AchrUn_randomP14860_001  67 KLCHNAYERGRRKKINDLYASLRALLPEsD---QSKNLSIPLTISRVLKYIPELQ 118
                                    678*************************55...7777***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-1562133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.21E-963122No hitNo description
PROSITE profilePS5088812.86265117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-1067118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-1267131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-871123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MGWPPEDMAA QDLQCEDHFV CCTSKETDVS CQSLGFSSRP LEREIVDQDE LHYYTLIAMD  60
SSSSTKKLCH NAYERGRRKK INDLYASLRA LLPESDQSKN LSIPLTISRV LKYIPELQRQ  120
VERLQQRKEE ILLALSRPEE QSHCGDIVVY RPMVSAACLS NREVMVQVCL LSSHFSISFS  180
KILRLLKREG LHLVNASTYT THDGRCFCSL HIEARETFDT ECRIFCDTLL KEIKEQAELG  240
SRITWNM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018677221.10.0PREDICTED: transcription factor ORG2-like
TrEMBLM0U9950.0M0U995_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP14860_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32803472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.13e-27bHLH family protein