PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP15440_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 322aa    MW: 35830.6 Da    PI: 8.2054
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP15440_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.22.9e-13138185355
                                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                    + h ++Er+RR+++ ++f eL  ++P +     kK++Ka++L  A++Y+k+Lq
  GSMUA_AchrUn_randomP15440_001 138 QEHIMAERKRREKLSQRFIELSAVVPGL-----KKMDKASVLSDAIKYLKQLQ 185
                                    5799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.77135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-17138204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-11138185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-17139198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.55E-13140189No hitNo description
SMARTSM003537.6E-15141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MDHSFFNQWD LTALDHYSTP VALGRDLDQS PSSESYTSYP SSHPQASTVR PNKLIKTSSW  60
KSCATEQNSA PEASCPRILS FGNPESPICQ YGSQAATGKT KEETDGSIPK GSKRNYDTMF  120
GDGTKSGNTG VRSASHNQEH IMAERKRREK LSQRFIELSA VVPGLKKMDK ASVLSDAIKY  180
LKQLQENVKA LEDQVAKRNV ESAVLVKKYQ LCADDDSSSC TENFNERQSG ESLPEIEARV  240
CEKTILIRIH CENRKGVLVK ALCEIEKLHL SVMNTSVMPF AGSSLDITVM TQARLSMKLI  300
QEFSMTAKDI VKKLNSAFRE FM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143148ERKRRE
2144149RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009387102.10.0PREDICTED: transcription factor bHLH18-like
RefseqXP_009387103.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLM0U9F30.0M0U9F3_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP15440_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-59bHLH family protein