PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP15500_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 283aa    MW: 31298.3 Da    PI: 8.5992
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP15500_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-11115163355
                                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     +h+ +Er RR++i +++  L++l+P +    sk + Ka++L + ++Y++sLq
  GSMUA_AchrUn_randomP15500_001 115 NSHSLAERIRREKISERMKLLQDLVPGC----SKINGKAMMLDEIINYVQSLQ 163
                                    58**************************....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.81E-11110167No hitNo description
SuperFamilySSF474591.26E-16110180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16112180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.275112162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-9115163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-10118168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MSASCLSERY QLGSAPFPPH KAVISKHSIE TNIKGNKRKG QAECGALPSQ SPEDRAQNVK  60
AEEQYDVSLK SSSKHPTAND EKKRKNEVRL GSNNQSPASK DDYIHVRAKR GQATNSHSLA  120
ERIRREKISE RMKLLQDLVP GCSKINGKAM MLDEIINYVQ SLQRQVEFLS MKLAAVNPEL  180
NFDLEQILSG DIHSCYGGSA VPAIGPGMSS FQPQLYGSTF QRITQPEMFY SAPSSGDLLQ  240
ASLSQISNMS QLPIAWHNDL QNTLPMNSIP NETPTERNGI NPF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009387111.10.0PREDICTED: transcription factor bHLH49-like
RefseqXP_009387112.10.0PREDICTED: transcription factor bHLH49-like
RefseqXP_018677249.10.0PREDICTED: transcription factor bHLH49-like
RefseqXP_018677250.10.0PREDICTED: transcription factor bHLH49-like
RefseqXP_018677251.10.0PREDICTED: transcription factor bHLH49-like
TrEMBLM0U9F90.0M0U9F9_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP15500_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60333650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.28e-53bHLH family protein