PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP15790_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GeBP
Protein Properties Length: 412aa    MW: 45874.7 Da    PI: 5.1182
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP15790_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF5731062.9e-33180277297
                         DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkeps 79 
                                    lfqrlws + eivlL+Gl+++++k+g+   + +d++++ +f+k+s + ++s++ql +K+rrLKkKf+++ ++ak+g +p+
  GSMUA_AchrUn_randomP15790_001 180 LFQRLWSLDNEIVLLKGLVEYRSKKGTvaASAHDMEDLRNFIKGSFQTDFSNTQLADKVRRLKKKFETNNARAKNGADPT 259
                                    79************************9877778*********************************************** PP

                         DUF573  80 fskehdqkifelskkiWg 97 
                                    f+k+h+q+ ++lskk+Wg
  GSMUA_AchrUn_randomP15790_001 260 FTKPHEQDGYKLSKKVWG 277
                                    *****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014475.23E-66979No hitNo description
PfamPF045041.2E-30181277IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MKPSKHPSAA TSSHDGEEDD DDSSNEEDGQ RNKHQGDNGS EEEEDDDDEG SSDEGSDSDD  60
ANTMNKPLPP PPPPPPPPPK PQFQPLPKPT PEPSDSGSSG DSDSESDSSD DAPVTPASRP  120
SRAVDPSIKP INTKPMDTPN KPSKQANSPA PLQDRESLKR KHDVVERSEL DNHGGQKRQL  180
FQRLWSLDNE IVLLKGLVEY RSKKGTVAAS AHDMEDLRNF IKGSFQTDFS NTQLADKVRR  240
LKKKFETNNA RAKNGADPTF TKPHEQDGYK LSKKVWGVNR ITSEHLDANS ADSEDNEESE  300
SEMMNIRKSN EQQLTSLVVS KCHDAIVCES GDIVRVKIQF PYLWETVTKM ADEYLCGIAI  360
KRALEMVDVA KAKSMEEKLK KLKTTQMRQH LRRIDLNKET VKLILDAIGR SK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018677263.10.0PREDICTED: STOREKEEPER protein-like
TrEMBLM0U9I80.0M0U9I8_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP15790_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.16e-22DNA-binding storekeeper protein-related transcriptional regulator