PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP16100_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 177aa    MW: 18507.9 Da    PI: 10.4422
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP16100_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.26.5e-212777155
                            AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                   ++y+GVr ++ +gr++AeIrdp    k+ r++lg+f+taeeAa+a++aa+++++g
  GSMUA_AchrUn_randomP16100_001 27 TRYRGVRKRP-WGRYAAEIRDPA---KKCRVWLGTFDTAEEAARAYDAAALRFRG 77
                                   68********.**********84...36*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.52E-182785No hitNo description
PfamPF008476.1E-152777IPR001471AP2/ERF domain
PROSITE profilePS5103224.9872885IPR001471AP2/ERF domain
SMARTSM003802.2E-382891IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-332885IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-232886IPR016177DNA-binding domain
PRINTSPR003672.2E-112940IPR001471AP2/ERF domain
PRINTSPR003672.2E-115167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MAPRVSNPGG EGGHGAVVGG DGDWKGTRYR GVRKRPWGRY AAEIRDPAKK CRVWLGTFDT  60
AEEAARAYDA AALRFRGPKA KTNFPCPVDP AAAVAAAPAG FGSIAAAPAS TSSSTVESST  120
PSRQRAARHP PLDLDPGQPS ARFLFPHAAA AVAACPRPLG RVRFDLDLNM PPPPEVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-242589267ATERF1
3gcc_A3e-242589267ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9538602e-46EU953860.1 Zea mays clone 1447891 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009387180.12e-70PREDICTED: ethylene-responsive transcription factor 11-like
SwissprotQ9C5I32e-34ERF76_ARATH; Ethylene-responsive transcription factor 11
SwissprotQ9FE675e-34ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBLM0U9L91e-121M0U9L9_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP16100_0011e-122(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.12e-21ERF domain protein 11
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dubois M, et al.
    The ETHYLENE RESPONSE FACTORs ERF6 and ERF11 Antagonistically Regulate Mannitol-Induced Growth Inhibition in Arabidopsis.
    Plant Physiol., 2015. 169(1): p. 166-79
    [PMID:25995327]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Zhou X, et al.
    The ERF11 Transcription Factor Promotes Internode Elongation by Activating Gibberellin Biosynthesis and Signaling.
    Plant Physiol., 2016. 171(4): p. 2760-70
    [PMID:27255484]
  5. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  6. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]