PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP16400_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 194aa    MW: 22154.4 Da    PI: 10.3931
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP16400_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.46.1e-171259148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                   rg+W++eEd +l+d+++++G g+W++ ++  g+ R++++c++rw +yl
  GSMUA_AchrUn_randomP16400_001 12 RGAWSKEEDRKLIDYIRLHGEGCWRSLPKAAGLLRCGESCRLRWINYL 59
                                   89******************************99************97 PP
2Myb_DNA-binding51.13.1e-1665110148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                    rg++ ++E +l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  GSMUA_AchrUn_randomP16400_001  65 RGNFKEDEADLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 110
                                    89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-22462IPR009057Homeodomain-like
PROSITE profilePS5129416.418759IPR017930Myb domain
SuperFamilySSF466893.52E-2710106IPR009057Homeodomain-like
SMARTSM007176.7E-141161IPR001005SANT/Myb domain
PfamPF002492.8E-151259IPR001005SANT/Myb domain
CDDcd001673.57E-111459No hitNo description
PROSITE profilePS5129426.07160114IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2563115IPR009057Homeodomain-like
SMARTSM007175.5E-1564112IPR001005SANT/Myb domain
PfamPF002491.4E-1465110IPR001005SANT/Myb domain
CDDcd001672.90E-1067110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MRNPCDKRGT NRGAWSKEED RKLIDYIRLH GEGCWRSLPK AAGLLRCGES CRLRWINYLR  60
PDVKRGNFKE DEADLIIKLH ALLGNRWSLI AGRLPGRTDN EVKNYWNSHL RKKLKSMGVD  120
PDNHRLTQKA PLRRSRSSHS ASLSTDAVTS HENMKKCSST VLPDLNLDLT ICTPSSLEGQ  180
RLDRTATPTL LLFH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-271111426128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109115LRKKLKS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009387271.11e-141PREDICTED: myb-related protein 308-like
SwissprotP813932e-71MYB08_ANTMA; Myb-related protein 308
TrEMBLM0U9P91e-139M0U9P9_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP16400_0011e-140(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-70myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]