PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP17230_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family M-type_MADS
Protein Properties Length: 233aa    MW: 27168.5 Da    PI: 8.4788
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP17230_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.72.7e-171151343
                                   --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                         SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                                   i n+s r vtf kRr g++KK +EL +LCd+++++i+++ +
  GSMUA_AchrUn_randomP17230_001 11 IANDSTRRVTFKKRRRGLIKKVSELATLCDVKACLILYGAQ 51
                                   89************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.32149IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-22160IPR002100Transcription factor, MADS-box
CDDcd002661.54E-30285No hitNo description
PRINTSPR004048.5E-11323IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.06E-24395IPR002100Transcription factor, MADS-box
PfamPF003199.5E-171150IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MARKKVKLAW IANDSTRRVT FKKRRRGLIK KVSELATLCD VKACLILYGA QEQHPSVWPS  60
FHEAARVLNE FRSMPEMEQC KKMMNQEGFL FQRIAKLQEQ LRKQERENRE LETSLLMYEG  120
LAGRSLHDVG IEDATSLAWM VEMKAQLVYD RMEHIRKEHL ASREVEPKMH VPQTVAMEKT  180
PMQVAMEELQ RQSWFVEVGC TSDQKVKFGS GDEVLPPYNA HCSPWLDPYF PLN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAWIANDSTRRVTFKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009387364.11e-176PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLM0U9Y21e-174M0U9Y2_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP17230_0011e-175(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.17e-44AGAMOUS-like 80