PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP17260_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 257aa    MW: 28784.6 Da    PI: 8.7826
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP17260_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1416.9e-44101521129
                            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk............kvkaeekewyfFskrdkk 67 
                                    lppGfrF P+deelv++yL kkv ++  ++e + +++ +  ++ P  +              ++k + +ewyfFs rd+k
  GSMUA_AchrUn_randomP17260_001  10 LPPGFRFYPSDEELVCHYLYKKVLSNGGSAEGTmVEDSRCGDALPVVIVGcrrredvsfpldAAKLSANEWYFFSFRDRK 89 
                                    79*********************9999666554366667777777777533556666666665666889*********** PP

                            NAM  68 yatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                                    ya+g+r+nratksgyWkatgkd+++++  +++ vg++ktLvfy+grap+g kt Wvmhe+rle
  GSMUA_AchrUn_randomP17260_001  90 YASGSRANRATKSGYWKATGKDRTIYDPtTHTMVGMRKTLVFYQGRAPNGAKTGWVMHEFRLE 152
                                    ***************************966677***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-518170IPR003441NAC domain
PROSITE profilePS5100551.50110170IPR003441NAC domain
PfamPF023656.4E-2811151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGLRDIESTL PPGFRFYPSD EELVCHYLYK KVLSNGGSAE GTMVEDSRCG DALPVVIVGC  60
RRREDVSFPL DAAKLSANEW YFFSFRDRKY ASGSRANRAT KSGYWKATGK DRTIYDPTTH  120
TMVGMRKTLV FYQGRAPNGA KTGWVMHEFR LETPHSPPKE DWVLCRVFHK RKGEGEEHEQ  180
LSASSAMPAG VCHGQVGPSF STLPRQEDSS LNPFLNVALL QCNSLGFPQE TGSRFVTGIS  240
PRFSIFFFPK LLNNHGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-3911717169NAC domain-containing protein 19
3swm_B3e-3911717169NAC domain-containing protein 19
3swm_C3e-3911717169NAC domain-containing protein 19
3swm_D3e-3911717169NAC domain-containing protein 19
3swp_A3e-3911717169NAC domain-containing protein 19
3swp_B3e-3911717169NAC domain-containing protein 19
3swp_C3e-3911717169NAC domain-containing protein 19
3swp_D3e-3911717169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009387368.11e-158PREDICTED: NAC domain-containing protein 21/22-like
SwissprotQ84TE63e-52NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLM0U9Y50.0M0U9Y5_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP17260_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.16e-71NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]