PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_AchrUn_randomP17550_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C3H

Protein Properties

Length: 148aa MW: 16254.1 Da PI: 8.4918

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_AchrUn_randomP17550_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.5	1.2e-09	9	35	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ Cr+f+rtG CkyG++ k++H++ GSMUA_AchrUn_randomP17550_001 9 PGRSDCRYFMRTGSCKYGSSRKYHHPK 35 6899****************9999995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.277	8	36	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.068	8	35	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.0E-7	9	35	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.8E-4	14	35	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	7.92	53	81	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.8	53	80	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MAVTFPERPG RSDCRYFMRT GSCKYGSSRK YHHPKERHQV VACTKGPFGL PLRPGERPCT 60 FCATYGNGKF GATCKFDHPS VAALPLQQPS LVFPYTRGSE SSWTIAENSS CTTTKNQMSS 120 VSSSELQDVV NDEHENPSTA TSPSSTNH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009385235.1	2e-51	PREDICTED: zinc finger CCCH domain-containing protein 33-like
Swissprot	Q5JLB5	6e-23	C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBL	M0UA14	1e-106	M0UA14_MUSAM; Uncharacterized protein
STRING	GSMUA_AchrUn_randomP17550_001	1e-107	(Musa acuminata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.2	2e-24	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Deng H,Liu H,Li X,Xiao J,Wang S A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease. Plant Physiol., 2012. 158(2): p. 876-89 [PMID:22158700]