PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_AchrUn_randomP17930_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

WRKY

Protein Properties

Length: 288aa MW: 31812 Da PI: 7.4737

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_AchrUn_randomP17930_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.5	2.5e-32	180	237	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt ++C+vkk+vers +d +vv++tYeg+H+h+ GSMUA_AchrUn_randomP17930_001 180 EDGYRWRKYGQKAVKNSPYPRSYYRCTAPKCNVKKRVERSYQDSSVVVTTYEGQHTHH 237 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.2E-34	164	239	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-28	171	239	IPR003657	WRKY domain
PROSITE profile	PS50811	30.745	174	239	IPR003657	WRKY domain
SMART	SM00774	2.3E-37	179	238	IPR003657	WRKY domain
Pfam	PF03106	6.1E-25	180	237	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MSGDEADHYG RRHDHFPFHG EPSSVSPQKP GSSSSGAANS LQVSDLKTLS PFLSFTDYLH 60 DSPVDFHNLV PAFDDPSPRS HLLGGAHEPC ELLAGGDGTA PVTPNSSMTS SSTEAAGEED 120 LGARKTDRPK QEEGEEKQAA GGEEGRDKFK KVNKPRKKGE RRQREPRIAF MTKSEVDHLE 180 DGYRWRKYGQ KAVKNSPYPR SYYRCTAPKC NVKKRVERSY QDSSVVVTTY EGQHTHHSPV 240 NLRLAPSPPT TSFRGDLLSH QPSPVNSNIN QQAEGHGLLQ DIVPTLEK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	8e-27	169	239	7	77	Probable WRKY transcription factor 4
2lex_A	8e-27	169	239	7	77	Probable WRKY transcription factor 4
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	145	157	RDKFKKVNKPRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00440	DAP	Transfer from AT4G18170	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009387434.1	0.0	PREDICTED: probable WRKY transcription factor 28
Swissprot	Q8VWJ2	4e-50	WRK28_ARATH; WRKY transcription factor 28
TrEMBL	M0UA52	0.0	M0UA52_MUSAM; Uncharacterized protein
STRING	GSMUA_AchrUn_randomP17930_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP623	37	173

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18170.1	9e-50	WRKY DNA-binding protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim SH, et al. Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis. Mol. Cells, 2014. 37(11): p. 833-40 [PMID:25358503] Zhao L, et al. KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535 [PMID:29288215]