PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_AchrUn_randomP18520_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Protein Properties

Length: 678aa MW: 75037.4 Da PI: 6.7123

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_AchrUn_randomP18520_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	61.9	1.1e-19	515	612	2	96
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--T CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLke 76 +kvl++sdv+++gr+vlpkk ae+h +++ + ++ + +ed ++++W++++++ ++ks++y+l+ ++ +Fv++ngL+e GSMUA_AchrUn_randomP18520_001 515 QKVLKQSDVGSLGRIVLPKKEAETHlpELDARDGISIPMEDiGTSQVWNMRYRFwpNNKSRMYLLE-NTGDFVRSNGLQE 593 79***********************99999*****7777***99777777777777.********* PP T-EEEEEE-SS.SEE..EEEE CS B3 77 gDfvvFkldgr.sefelvvkv 96 gDf+v++ ++ ++++++++ GSMUA_AchrUn_randomP18520_001 594 GDFIVIY--SDvKCGKYMIRG 612 *****..566999888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.8E-28	505	618	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10015	8.92E-35	512	613	No hit	No description
SuperFamily	SSF101936	2.35E-22	513	609	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	7.4E-19	514	616	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.362	514	616	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.8E-16	515	611	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 678 aa Download sequence Send to blast
MPSSCYIHSG WKWFLINPCE IGLENKISQT VECESRRKQG DVVFASDEVE EAMADHKVEG 60 EEKVLGVGCG GDTAAGVDDI VLNIDGEDLI FSEDTFPCLP DFPCLSSPSA TPSPSSASTL 120 HAKNAVLSSC SSASSSSSSS SSSSSWSFLQ SSEFADGLDI LGDIDLFDLS IDPWDPPSLF 180 HADEAKEGRL HGHGEGVPQQ AQEEESSEEL ARIFLEWLRS NKDSISPEDL RSIKLKRATI 240 ECAARRLGRT KQGRTQLLKL ILTWVQNNHL QRKRHRLPYS YDHQPRPFPI SPNPNQLDYN 300 CNPWSPYSMD PSTAATHPAL LSAYAGGGNG EMGYPSATAN PYPYHHSSST LPQFAPYPGT 360 SASHPLSMAP PQYSGGMTNQ FLGHPMYHQG QRLPGTTSAT KEARKKRMAR QRRFSSLHQH 420 RNHNQPLHLQ HAHHPVGSTE GANGSSHSNT RNWGFWTSMS SSSHQMNHMA EAQNASNMQQ 480 TPPPPAAQLP QRPQLTTAST SEKRQGEKNL KFLLQKVLKQ SDVGSLGRIV LPKKEAETHL 540 PELDARDGIS IPMEDIGTSQ VWNMRYRFWP NNKSRMYLLE NTGDFVRSNG LQEGDFIVIY 600 SDVKCGKYMI RGVKVRQPVE ARAPSSRNTG KAHQRRNGLE KMAGASKMKG RSLIHDDADK 660 YDDDDDDDDD DVPPSMHG

Sequence ? help Back to Top

Protein Sequence Length: 678 aa Download sequence Send to blast

MPSSCYIHSG WKWFLINPCE IGLENKISQT VECESRRKQG DVVFASDEVE EAMADHKVEG  60
EEKVLGVGCG GDTAAGVDDI VLNIDGEDLI FSEDTFPCLP DFPCLSSPSA TPSPSSASTL  120
HAKNAVLSSC SSASSSSSSS SSSSSWSFLQ SSEFADGLDI LGDIDLFDLS IDPWDPPSLF  180
HADEAKEGRL HGHGEGVPQQ AQEEESSEEL ARIFLEWLRS NKDSISPEDL RSIKLKRATI  240
ECAARRLGRT KQGRTQLLKL ILTWVQNNHL QRKRHRLPYS YDHQPRPFPI SPNPNQLDYN  300
CNPWSPYSMD PSTAATHPAL LSAYAGGGNG EMGYPSATAN PYPYHHSSST LPQFAPYPGT  360
SASHPLSMAP PQYSGGMTNQ FLGHPMYHQG QRLPGTTSAT KEARKKRMAR QRRFSSLHQH  420
RNHNQPLHLQ HAHHPVGSTE GANGSSHSNT RNWGFWTSMS SSSHQMNHMA EAQNASNMQQ  480
TPPPPAAQLP QRPQLTTAST SEKRQGEKNL KFLLQKVLKQ SDVGSLGRIV LPKKEAETHL  540
PELDARDGIS IPMEDIGTSQ VWNMRYRFWP NNKSRMYLLE NTGDFVRSNG LQEGDFIVIY  600
SDVKCGKYMI RGVKVRQPVE ARAPSSRNTG KAHQRRNGLE KMAGASKMKG RSLIHDDADK  660
YDDDDDDDDD DVPPSMHG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9b_A	3e-37	510	620	1	111	B3 domain-containing transcription factor FUS3
6j9b_D	3e-37	510	620	1	111	B3 domain-containing transcription factor FUS3
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator specifically required for expression of the maturation program in the seed development. Probably potentiates the response to the seed-specific hormone abscisic acid (ABA). May bind to DNA indirectly.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018677365.1	0.0	PREDICTED: regulatory protein viviparous-1-like
Swissprot	P26307	1e-117	VIV1_MAIZE; Regulatory protein viviparous-1
TrEMBL	M0UAB1	0.0	M0UAB1_MUSAM; Uncharacterized protein
STRING	GSMUA_AchrUn_randomP18520_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7529	34	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24650.1	2e-99	B3 family protein

Publications ? help Back to Top
Williamson JD,Scandalios JG Differential response of maize catalases to abscisic acid: Vp1 transcriptional activator is not required for abscisic acid-regulated Cat1 expression. Proc. Natl. Acad. Sci. U.S.A., 1992. 89(18): p. 8842-6 [PMID:1388272] Hoecker U,Vasil IK,McCarty DR Integrated control of seed maturation and germination programs by activator and repressor functions of Viviparous-1 of maize. Genes Dev., 1995. 9(20): p. 2459-69 [PMID:7590227]