PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_AchrUn_randomP18610_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

WOX

Protein Properties

Length: 284aa MW: 31447.9 Da PI: 5.5554

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_AchrUn_randomP18610_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.8	2.9e-21	104	164	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le++F++ n +ps++ +++++++l +++e++V++WFqNrRa+ k+ GSMUA_AchrUn_randomP18610_001 104 RQRWTPTSMQLQILETMFNQgNGTPSKQNIKQITTELsqhgQISESNVYNWFQNRRARSKR 164 89***************99************************************97 PP
2	Wus_type_Homeobox	100.9	9.2e-33	103	166	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPt+ Q++iLe+++++G tP+k++i++it+eL+++G+i++ NV++WFQNr+aR+++k+ GSMUA_AchrUn_randomP18610_001 103 ARQRWTPTSMQLQILETMFNQGNGTPSKQNIKQITTELSQHGQISESNVYNWFQNRRARSKRKK 166 789***********************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-16	98	169	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.835	100	165	IPR001356	Homeobox domain
SMART	SM00389	3.5E-12	102	169	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.92E-17	103	167	IPR009057	Homeodomain-like
Pfam	PF00046	4.3E-19	104	164	IPR001356	Homeobox domain
CDD	cd00086	1.00E-12	104	166	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MEWERGPGGG GGGVRNDEEG EGRSGSGGGG DGAGGEGVLY VKVMTDEQME VLRRQIAVYA 60 TICEQLVEMH KAITAHHDSL AGMRLGGLYN DSLMASGGHK ITARQRWTPT SMQLQILETM 120 FNQGNGTPSK QNIKQITTEL SQHGQISESN VYNWFQNRRA RSKRKKMAAL PSNTESEAEA 180 DEESPDEKKP RPDEFHHENL PVSISNHPIY DEQMNAEVHL LASEINQAQG RCRLNESLKS 240 SGGLDHMSYE SVLSTPRLDH LMDKFDMPTS FSPFHSGERY DVMG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009387512.1	0.0	PREDICTED: WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	1e-87	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	M0UAC0	0.0	M0UAC0_MUSAM; Uncharacterized protein
STRING	GSMUA_AchrUn_randomP18610_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	4e-60	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]