PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP18890_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family B3
Protein Properties Length: 293aa    MW: 33778.9 Da    PI: 10.137
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP18890_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.46.5e-19118206197
                                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                                    f+k +++s+v++  +l lp +f++eh  +   + +++lede+g++++  +   +++ +  l++GW++F+ +++L++gD++
  GSMUA_AchrUn_randomP18890_001 118 FIKSMVRSHVSSCFWLGLPTRFCKEHLPP--YELKMVLEDENGNEFDAIY--IGNRTG--LSGGWRGFAMEHNLEDGDVL 191
                                    89************************533..4458***************..555544..******************** PP

                                    EEEE-SSSEE..EEEEE CS
                             B3  81 vFkldgrsefelvvkvf 97 
                                    vF+l +   +++++ ++
  GSMUA_AchrUn_randomP18890_001 192 VFELRE--PARFKIYII 206
                                    ***854..444466665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.79E-23112207IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.4E-20112207IPR015300DNA-binding pseudobarrel domain
CDDcd100174.00E-29116207No hitNo description
PROSITE profilePS5086313.155118209IPR003340B3 DNA binding domain
SMARTSM010191.1E-22118209IPR003340B3 DNA binding domain
PfamPF023623.4E-17118207IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MYRPYWVELG ISRISKSLLE VAKCEHKLLK PRASPKMKKI FGKMEIRRSS RARNLVPSYR  60
DQVRMCRIMT RKTRLVYCKS EQRGRVYTGR IASYEEQHRA VEKAEELQSN LDPIYPSFIK  120
SMVRSHVSSC FWLGLPTRFC KEHLPPYELK MVLEDENGNE FDAIYIGNRT GLSGGWRGFA  180
MEHNLEDGDV LVFELREPAR FKIYIIKAID SEAHEDKITN RHTEGTESQG TEESPEQLLA  240
SQSRKTRSGS RRKPAKTKKS AYKASRPILI FLTAVVFADL PTVGGLKENE GRM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1867521e-32AC186752.1 Musa acuminata clone MA4_64C22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009387551.11e-178PREDICTED: B3 domain-containing protein Os05g0481400
SwissprotQ5KQI42e-93Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBLM0UAE80.0M0UAE8_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP18890_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113703339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.13e-47B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]