PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP20690_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 297aa    MW: 32414 Da    PI: 4.6953
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP20690_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.42e-06173216755
                                    HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                            HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                     + r RR+ri ++ +eL +l+P  +      K++ ae+ + A +Y+k Lq
  GSMUA_AchrUn_randomP20690_001 173 VAARARRKRISEKTQELGRLIPGgN------KMNTAEMFQAAYKYVKFLQ 216
                                    56799*****************955......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.731166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.05E-7169219No hitNo description
SuperFamilySSF474594.19E-11169224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-10170221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.6E-8172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MALSLDGSWE AAEHLIPDVG LFHESQSEVA DALLGFFSDP VEACRLPIDS LFDRPGDAYD  60
DTGPTLLHSL VPHPCFSAPS VVSLPPELYA PSDEFDLYHR PKRPRSCNDL CRPWELMPEA  120
NSCNVAMPAP AVTGCQVPEL STEFMAPPLP AVVTPACDGE RKAGGGFLSA QSVAARARRK  180
RISEKTQELG RLIPGGNKMN TAEMFQAAYK YVKFLQAQVG ILELMASIKG WNAPQQVEQK  240
LRLLLASTVV QEKLSGEGRC LVPEQAIESM STGRDIESDM LISKDLDRFI ESVGRSN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009387764.10.0PREDICTED: transcription factor bHLH52-like
TrEMBLM0UAX80.0M0UAX8_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP20690_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62013051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.12e-32bHLH family protein