PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP20840_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 275aa    MW: 30127.6 Da    PI: 7.7817
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP20840_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.97.7e-21104153255
                            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  GSMUA_AchrUn_randomP20840_001 104 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 153
                                    59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.50E-34103162No hitNo description
PROSITE profilePS5103223.222104161IPR001471AP2/ERF domain
SMARTSM003803.9E-37104167IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-23104162IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-32104162IPR001471AP2/ERF domain
PfamPF008472.4E-14105153IPR001471AP2/ERF domain
PRINTSPR003672.2E-11105116IPR001471AP2/ERF domain
PRINTSPR003672.2E-11127143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MATAIDMYRS CPSTSADSVD EELMRALEPF MTSDSASSLP HSPPPSSTST LTYPSPSSLT  60
SFLYPSPLPP NHHRHHHQST GFLGPRPQPM KHTVSPAVSK PTKLYRGVRQ RHWGKWVAEI  120
RLPKNRTRLW LGTFDTAEEA ALAYDKAAYK LRGDLARLNF PNYRHAAAAA PGPLHSTVDA  180
KLQALCQNLA NSSKRGGGPP RSSTLQPNPE PATIGSGDPA PTIGEDSSSG SSSASAFEMQ  240
RLDFTEMPWD ETDNLMLRKY PSWEIDWDSI LSSSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20103161160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-20103161463ATERF1
3gcc_A3e-20103161463ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6656944e-45KM665694.1 Ananas bracteatus clone 50873f microsatellite sequence.
GenBankKM6656954e-45KM665695.1 Ananas bracteatus clone 50873g microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009387776.11e-139PREDICTED: ethylene-responsive transcription factor RAP2-13-like
TrEMBLM0UAZ20.0M0UAZ2_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP20840_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.12e-47ERF family protein