PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP21150_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 223aa    MW: 24442.3 Da    PI: 6.8769
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP21150_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.42.9e-071738122
                                   TSSS-HHHHHHHHHHHHHTTTT CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg 22
                                   +g+W++eEde l ++v+++G++
  GSMUA_AchrUn_randomP21150_001 17 KGSWSPEEDEALTRLVERHGPR 38
                                   799*****************98 PP
2Myb_DNA-binding50.74e-164788346
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                                   ++T  Ed  +++a++++G++ W+tIar ++ gRt++ +k++w++
  GSMUA_AchrUn_randomP21150_001 47 PFTSAEDAAILEAHARFGNK-WATIARLLP-GRTDNAIKNHWNS 88
                                   89******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-61238IPR009057Homeodomain-like
SuperFamilySSF466895.35E-171586IPR009057Homeodomain-like
SMARTSM007172.8E-141692IPR001005SANT/Myb domain
CDDcd001677.44E-121987No hitNo description
PROSITE profilePS5129422.5254094IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.6E-204193IPR009057Homeodomain-like
PfamPF002491.6E-134788IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MMMMMAEESY RREQRVKGSW SPEEDEALTR LVERHGPRNC PAVHHRPFTS AEDAAILEAH  60
ARFGNKWATI ARLLPGRTDN AIKNHWNSAL RRRATFAAPD PILPSSSSPT ANHEPDDSYS  120
GSARKRRRSS DNANEGGCRS AAAELGTSLS LSLPGEGGGV MAAVSGEERT WEAPPGDVCL  180
VTIMRQMIAE EVRSYIDRTR SQGGVEMTVP AVVKPETAFD CHN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-2216943105MYB PROTO-ONCOGENE PROTEIN
1h88_C8e-22169457159MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-22169457159MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-2216943105C-Myb DNA-Binding Domain
1msf_C2e-2216943105C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123127RKRRR
2123128RKRRRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3552417e-31AK355241.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1018A13.
GenBankKF0594187e-31KF059418.1 Salvia miltiorrhiza MYB-related transcription factor (MYB64) mRNA, complete cds.
GenBankKF0595287e-31KF059528.1 Salvia miltiorrhiza MYB-related transcription factor (MYB64) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009387830.11e-153PREDICTED: transcription factor MYB44-like
TrEMBLM0UB231e-163M0UB23_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP21150_0011e-164(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.12e-33myb domain protein 73